View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17516_high_4 (Length: 629)
Name: NF17516_high_4
Description: NF17516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17516_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 552; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 20 - 611
Target Start/End: Original strand, 5848533 - 5849124
Alignment:
| Q |
20 |
tcaagatctgattaaacgaaaccaatcattaacactgtcaatgcaggtaggacatgtccaaaaaaggttcaactatacaataccttcgaggcgtagtttt |
119 |
Q |
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| T |
5848533 |
tcaagatctgattaaacgaaaccaatcattaacaatgtcaatgcaggtaggacatgtccggaaaaggttcaactatacaataccttcgaggcgtagtttt |
5848632 |
T |
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| Q |
120 |
gccggaagggtttggtatagtctttgagatggctggaaatggtagtaattttgtgcggaaatgtaatcaccattcaccctccttgattacttttcttcat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5848633 |
gccggaagggtttggtatagtctttgagatggctggaaatgggagtaattttgtgcggaaatgtaatcaccattcaccctccttgattacttttcttcat |
5848732 |
T |
|
| Q |
220 |
cctctcctatcaagaaacattggaaatcgctaactctaatttgacatgcatgcaacggtttgaaaattttggaaagctagaaaactttcttataattttt |
319 |
Q |
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| T |
5848733 |
cctctcctatcaagaaacattggaaatcgctaactctgatttgacatgcatgcaacagtttgaaaaatttggaaagctagaaaactttcttaaaattttt |
5848832 |
T |
|
| Q |
320 |
ctaattttcggcattttcacaaatagaccaatctttaaaatattccattttatttataactttgaacattttcgttccatcaccaatattcttatcccgt |
419 |
Q |
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| T |
5848833 |
ctaattttcggcattttcactaatagaccaatctttaaaatattccattttatttataactttgaacattttcgttccatcaccaatattcttatcccgt |
5848932 |
T |
|
| Q |
420 |
agttcgaaaatttcttgattctcccaacttctttcttgttacttttctaatcctccatccaatcttgtctcacatatcatttacattttcttgtggtagc |
519 |
Q |
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| T |
5848933 |
agttcgaaaatttcttgattctcccaacttctttcttgttacttttctaatcctccgtccaatcttgtctcacatatcatttacattttcttgtggtagc |
5849032 |
T |
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| Q |
520 |
tcacaatctctctaaaatctagtgtagaaaaatccattgttttacttacttcaaaagccaccatttgaactgtggagacccatcacgacttc |
611 |
Q |
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| T |
5849033 |
tcacaatctctctaaaatctagtgtagaaaaatccattgttttacttacttcaaaagccaccatttgaactgtggagacccatcacgacttc |
5849124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 379 - 470
Target Start/End: Complemental strand, 21913644 - 21913553
Alignment:
| Q |
379 |
ctttgaacattttcgttccatcaccaat-attcttatcccgtagttcgaaaatttcttgattctcccaacttctttcttgttacttttctaat |
470 |
Q |
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| T |
21913644 |
ctttgaacattttcgttctaccaccaaggatttttacccctaagttc-aaaacttcttgattctcccaacttctcttttgctacttttctaat |
21913553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 260
Target Start/End: Original strand, 12332453 - 12332518
Alignment:
| Q |
195 |
accctccttgattacttttcttcatcctctcctatcaagaaacattggaaatcgctaactctaatt |
260 |
Q |
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| T |
12332453 |
accctccttgactacttctcttcctcttctctaagcaagaaacattggaaacggctaactctaatt |
12332518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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