View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17516_high_5 (Length: 529)

Name: NF17516_high_5
Description: NF17516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17516_high_5
NF17516_high_5
[»] chr8 (4 HSPs)
chr8 (166-355)||(10679598-10679786)
chr8 (17-112)||(10679449-10679544)
chr8 (356-460)||(39312534-39312638)
chr8 (366-404)||(13476361-13476399)
[»] chr1 (6 HSPs)
chr1 (355-468)||(51285245-51285358)
chr1 (356-462)||(48494885-48494991)
chr1 (353-460)||(47508233-47508340)
chr1 (382-457)||(47189293-47189368)
chr1 (355-415)||(5733160-5733220)
chr1 (357-428)||(12307925-12307996)
[»] chr7 (3 HSPs)
chr7 (394-524)||(32635359-32635498)
chr7 (356-404)||(11033487-11033535)
chr7 (355-460)||(37125552-37125657)
[»] scaffold1342 (1 HSPs)
scaffold1342 (356-433)||(1227-1304)
[»] chr2 (4 HSPs)
chr2 (356-433)||(4009254-4009331)
chr2 (356-444)||(36620177-36620265)
chr2 (356-419)||(29522585-29522648)
chr2 (356-433)||(43326101-43326178)
[»] chr6 (2 HSPs)
chr6 (356-460)||(92308-92412)
chr6 (355-456)||(11139334-11139434)
[»] chr5 (3 HSPs)
chr5 (359-457)||(13627363-13627461)
chr5 (355-426)||(3805677-3805748)
chr5 (356-404)||(22775942-22775990)
[»] scaffold0026 (1 HSPs)
scaffold0026 (356-432)||(91558-91634)
[»] chr4 (2 HSPs)
chr4 (356-460)||(55403334-55403438)
chr4 (375-404)||(54486281-54486310)


Alignment Details
Target: chr8 (Bit Score: 104; Significance: 1e-51; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 166 - 355
Target Start/End: Original strand, 10679598 - 10679786
Alignment:
Q  166 agtcgttcaaatacaattgagaaaatgaatgataagatatnnnnnnntacgagagaagtagataaactgtatgattaagaaaacgaaattgagatataga 265  Q
    ||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  10679598 agtcgttcaaatacaattgagaaaatgaatgataagatataaaaaaatacgagagaagtagataaactgtatgattaagaaaacgaaattgag--ataga 10679695  T
Q  266 cataggaagtaggataaatctggac-agnnnnnnnnnnnnnacagtacttaacgattgaccgggtcacaagacaacttttattattgtacc 355  Q
    |||||||||||||||||||||||||  |             ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  10679696 cataggaagtaggataaatctggactggacagatatatataacagtacttaacgattgaccgggtcaccagacaacttttattattgtacc 10679786  T

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Target: chr8; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 10679449 - 10679544
Alignment:
Q  17 aaagcctgaaaggtttcaaaagagaatgttcacacggtttgtgggatcctcaccaattcaaatgatcaacacaaaatcatccattaacatatgttg 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10679449 aaagcctgaaaggtttcaaaagagaatgttcacacggtttgtgggatcctcagcaattcaaatgatcaacacaaaatcatccattaacatatgttg 10679544  T

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Target: chr8; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 356 - 460
Target Start/End: Original strand, 39312534 - 39312638
Alignment:
Q  356 cagtggcggagccacgtggggacaggggatggccatggccatcccatt-atttatgtgaaaataccaaaatacccttgagttaatatgaaattcacaacc 454  Q
    |||||||||||||||||| ||||| |||||||||||||||| |||||| |||| || |||| |||||||||||||||| ||||| ||||| || ||||||    
T  39312534 cagtggcggagccacgtgaggacatgggatggccatggccaccccattaatttgtg-gaaattaccaaaatacccttgggttaaaatgaattttacaacc 39312632  T
Q  455 atgcca 460  Q
    ||||||    
T  39312633 atgcca 39312638  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 366 - 404
Target Start/End: Complemental strand, 13476399 - 13476361
Alignment:
Q  366 gccacgtggggacaggggatggccatggccatcccatta 404  Q
    |||||||| |||||||||||| |||||||||||||||||    
T  13476399 gccacgtgtggacaggggatgaccatggccatcccatta 13476361  T

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Target: chr1 (Bit Score: 78; Significance: 4e-36; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 355 - 468
Target Start/End: Original strand, 51285245 - 51285358
Alignment:
Q  355 ccagtggcggagccacgtggggacaggggatggccatggccatcccattatttatgtgaaaataccaaaatacccttgagttaatatgaaattcacaacc 454  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||||| || |||| ||||||||||||||| ||||||||| ||||  ||||||    
T  51285245 ccagtggcggagccacgtggggacaggggaaggccatggccaccccattatttttgagaaattaccaaaatacccttaagttaatataaaatctacaacc 51285344  T
Q  455 atgccaccctcact 468  Q
    ||||||||||||||    
T  51285345 atgccaccctcact 51285358  T

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Target: chr1; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 356 - 462
Target Start/End: Complemental strand, 48494991 - 48494885
Alignment:
Q  356 cagtggcggagccacgtggggacaggggatggccatggccatcccattatttatgtgaaaataccaaaatacccttgagttaatatgaaattcacaacca 455  Q
    |||||||||| ||||||||||||||||||||||||||  | ||||||||||| ||  ||| ||||||||||||||||||||||||||||||| |||||||    
T  48494991 cagtggcggaaccacgtggggacaggggatggccatgatcgtcccattatttgtggaaaattaccaaaatacccttgagttaatatgaaatttacaacca 48494892  T
Q  456 tgccacc 462  Q
    |||||||    
T  48494891 tgccacc 48494885  T

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Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 353 - 460
Target Start/End: Original strand, 47508233 - 47508340
Alignment:
Q  353 acccagtggcggagccacgtggggacaggggatggccatggccatcccat-tatttatgtgaaaataccaaaatacccttgagttaatatgaaattcaca 451  Q
    ||||||||||||||||||||| |||||||||||||||||||||| |||||  |||| || |||| |||||||||||||||| ||||| ||||| || |||    
T  47508233 acccagtggcggagccacgtgaggacaggggatggccatggccaccccatcaatttgtg-gaaattaccaaaatacccttgggttaaaatgaattttaca 47508331  T
Q  452 accatgcca 460  Q
    |||||||||    
T  47508332 accatgcca 47508340  T

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Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 382 - 457
Target Start/End: Original strand, 47189293 - 47189368
Alignment:
Q  382 ggatggccatggccatcccattatttatgtgaaaataccaaaatacccttgagttaatatgaaattcacaaccatg 457  Q
    ||||||||||||||  |||||||||| || |||| ||||||||||||||||||||||||||||||  |||||||||    
T  47189293 ggatggccatggcctacccattatttttgggaaattaccaaaatacccttgagttaatatgaaatatacaaccatg 47189368  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 355 - 415
Target Start/End: Original strand, 5733160 - 5733220
Alignment:
Q  355 ccagtggcggagccacgtggggacaggggatggccatggccatcccattatttatgtgaaa 415  Q
    |||||||||||||||| ||||||| |||||||||||| |||  ||||||||||||| ||||    
T  5733160 ccagtggcggagccacttggggactggggatggccatagcctacccattatttatgagaaa 5733220  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 428
Target Start/End: Complemental strand, 12307996 - 12307925
Alignment:
Q  357 agtggcggagccacgtggggacaggggatggccatggccatcccattatttatgtgaaaataccaaaatacc 428  Q
    |||||||||||| | ||||||||||| ||||||||||||  ||||||| || ||||||| ||| | ||||||    
T  12307996 agtggcggagccgcatggggacagggtatggccatggcctacccattagttctgtgaaattactataatacc 12307925  T

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Target: chr7 (Bit Score: 76; Significance: 7e-35; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 394 - 524
Target Start/End: Original strand, 32635359 - 32635498
Alignment:
Q  394 ccatcccattatttatgtgaaaataccaaaatacccttgagttaatatgaaattcacaaccatgccaccctcact---------atgcgctcttctctct 484  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||         | |||||| ||||||     
T  32635359 ccatcccattatttatgagaaattaccaaaatacccttgagttaatatgaaatttacaaccatgccaccctcacttttcctgaaacgcgctcatctctcc 32635458  T
Q  485 actctggcgacgaccacgtgagttcactcttcttctctct 524  Q
    ||||||||||||||||||  ||||||||||||||||||||    
T  32635459 actctggcgacgaccacgcaagttcactcttcttctctct 32635498  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 356 - 404
Target Start/End: Original strand, 11033487 - 11033535
Alignment:
Q  356 cagtggcggagccacgtggggacaggggatggccatggccatcccatta 404  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||    
T  11033487 cagtggcggagccacgtgtggacagggaatggccatggccatcccatta 11033535  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 355 - 460
Target Start/End: Original strand, 37125552 - 37125657
Alignment:
Q  355 ccagtggcggagccacgtggggacaggggatggccatggccatcccattatttatgtgaaaataccaaaatacccttgagttaatatgaaattcacaacc 454  Q
    |||||||||||||||| ||||||||| | ||||||||||||  ||||||| || | ||||| ||| | |||||||||||  |||| | || || ||||||    
T  37125552 ccagtggcggagccacatggggacagagtatggccatggcctacccattaattctttgaaattactataatacccttgatataattttaattttacaacc 37125651  T
Q  455 atgcca 460  Q
    ||||||    
T  37125652 atgcca 37125657  T

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Target: scaffold1342 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold1342
Description:

Target: scaffold1342; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 356 - 433
Target Start/End: Original strand, 1227 - 1304
Alignment:
Q  356 cagtggcggagccacgtggggacaggggatggccatggccatcccattatttatgtgaaaataccaaaatacccttga 433  Q
    ||||||||||||||| ||||||||||||||||||||||||  |||||||||| ||||||| ||| |  ||||||||||    
T  1227 cagtggcggagccacttggggacaggggatggccatggcctgcccattatttttgtgaaattactattatacccttga 1304  T

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Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 356 - 433
Target Start/End: Original strand, 4009254 - 4009331
Alignment:
Q  356 cagtggcggagccacgtggggacaggggatggccatggccatcccattatttatgtgaaaataccaaaatacccttga 433  Q
    ||||||||||||||| ||||||||||||||||||||||||  |||||||||| ||||||| ||| |  ||||||||||    
T  4009254 cagtggcggagccacttggggacaggggatggccatggcctgcccattatttttgtgaaattactattatacccttga 4009331  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 356 - 444
Target Start/End: Complemental strand, 36620265 - 36620177
Alignment:
Q  356 cagtggcggagccacgtggggacaggggatggccatggccatcccattatttatgtgaaaataccaaaatacccttgagttaatatgaa 444  Q
    |||||||||||||||||| |||| ||| ||||| ||| ||  ||||||| || ||||||| ||||| ||||||||| || |||| ||||    
T  36620265 cagtggcggagccacgtgaggactgggtatggcgatgtcctgcccattaattttgtgaaattaccataatacccttaagctaatttgaa 36620177  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 419
Target Start/End: Complemental strand, 29522648 - 29522585
Alignment:
Q  356 cagtggcggagccacgtggggacaggggatggccatggccatcccattatttatgtgaaaatac 419  Q
    |||||||||||||||||| |||| ||| ||||||||||||  ||||||  || |||||||||||    
T  29522648 cagtggcggagccacgtgtggactgggtatggccatggcctacccatttattttgtgaaaatac 29522585  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 433
Target Start/End: Original strand, 43326101 - 43326178
Alignment:
Q  356 cagtggcggagccacgtggggacaggggatggccatggccatcccattatttatgtgaaaataccaaaatacccttga 433  Q
    ||||||||||||||| || |||||||| || | |||||||  ||||||| || ||||||| ||| | |||||||||||    
T  43326101 cagtggcggagccacatgaggacagggtatagtcatggcctacccattaattctgtgaaattactataatacccttga 43326178  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 356 - 460
Target Start/End: Original strand, 92308 - 92412
Alignment:
Q  356 cagtggcggagccacgtggggacaggggatggccatggccatcccattatttatgtgaaaataccaaaatacccttgagttaatatgaaattcacaacca 455  Q
    ||||||||||||||| ||||||||||| ||||||||||||  ||||||| || ||||||| ||| | |||||| ||||  |||| | || || |||||||    
T  92308 cagtggcggagccacatggggacagggtatggccatggcctacccattaattctgtgaaattactataatacctttgatataatcttaattttacaacca 92407  T
Q  456 tgcca 460  Q
    |||||    
T  92408 tgcca 92412  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 355 - 456
Target Start/End: Original strand, 11139334 - 11139434
Alignment:
Q  355 ccagtggcggagccacgtggggacaggggatggccatggccatcccattatttatgtgaaaataccaaaatacccttgagttaatatgaaattcacaacc 454  Q
    ||||||||||| |||| || |||| ||||||||||||||||  ||||||||||    |||| || ||||||||||||  ||||| |||||||| ||||||    
T  11139334 ccagtggcgga-ccacttgaggactggggatggccatggcctccccattattttatagaaattatcaaaatacccttaggttaaaatgaaatttacaacc 11139432  T
Q  455 at 456  Q
    ||    
T  11139433 at 11139434  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 359 - 457
Target Start/End: Complemental strand, 13627461 - 13627363
Alignment:
Q  359 tggcggagccacgtggggacaggggatggccatggccatcccattatttatgtgaaaa-taccaaaatacccttgagttaatatgaaattcacaaccatg 457  Q
    |||| |||||||||| |||||||||||||||||||||| ||||||| || ||| |||| ||||||||||| ||||  |||| ||||| || |||||||||    
T  13627461 tggcagagccacgtgaggacaggggatggccatggccaccccattaatt-tgtaaaaattaccaaaatactcttggattaaaatgaattttacaaccatg 13627363  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 426
Target Start/End: Complemental strand, 3805748 - 3805677
Alignment:
Q  355 ccagtggcggagccacgtggggacaggggatggccatggccatcccattatttatgtgaaaataccaaaata 426  Q
    |||||||| |||||||||| |||| ||| ||||||||||||  ||||||| || || |||||||||| ||||    
T  3805748 ccagtggcagagccacgtgaggactgggtatggccatggcctacccattaattctgggaaaataccataata 3805677  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 356 - 404
Target Start/End: Original strand, 22775942 - 22775990
Alignment:
Q  356 cagtggcggagccacgtggggacaggggatggccatggccatcccatta 404  Q
    ||||||||||||||| |||||||||||| ||||||| |||  |||||||    
T  22775942 cagtggcggagccacttggggacaggggctggccatagcctacccatta 22775990  T

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Target: scaffold0026 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 356 - 432
Target Start/End: Original strand, 91558 - 91634
Alignment:
Q  356 cagtggcggagccacgtggggacaggggatggccatggccatcccattatttatgtgaaaataccaaaatacccttg 432  Q
    |||||| ||||||||||| |||||||| ||||||||||||  |||| ||||| ||||||| || || ||||||||||    
T  91558 cagtggtggagccacgtgaggacagggtatggccatggcctacccagtatttctgtgaaattatcataatacccttg 91634  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 356 - 460
Target Start/End: Original strand, 55403334 - 55403438
Alignment:
Q  356 cagtggcggagccacgtggggacaggggatggccatggccatcccattatttatgtgaaaataccaaaatacccttgagttaatatgaaattcacaacca 455  Q
    ||||||||||||||| ||||||||| | |||| |||||||  ||||||| || ||||||| ||| | |||||||||||  |||| | || || |||||||    
T  55403334 cagtggcggagccacatggggacagagtatggtcatggcctacccattaattctgtgaaattactataatacccttgatataattttaattttacaacca 55403433  T
Q  456 tgcca 460  Q
    |||||    
T  55403434 tgcca 55403438  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 404
Target Start/End: Original strand, 54486281 - 54486310
Alignment:
Q  375 ggacaggggatggccatggccatcccatta 404  Q
    ||||||||||||||||||||||||||||||    
T  54486281 ggacaggggatggccatggccatcccatta 54486310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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