View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17516_high_7 (Length: 454)

Name: NF17516_high_7
Description: NF17516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17516_high_7
NF17516_high_7
[»] chr6 (7 HSPs)
chr6 (62-440)||(4277191-4277571)
chr6 (4-52)||(17305542-17305590)
chr6 (1-52)||(11636686-11636736)
chr6 (1-52)||(12089120-12089170)
chr6 (1-52)||(14981724-14981774)
chr6 (149-188)||(24274141-24274180)
chr6 (4-52)||(25020550-25020597)
[»] chr5 (1 HSPs)
chr5 (111-174)||(24090932-24090995)
[»] chr3 (4 HSPs)
chr3 (1-52)||(14417891-14417941)
chr3 (1-52)||(33206780-33206830)
chr3 (1-52)||(47191396-47191446)
chr3 (1-52)||(3955329-3955381)
[»] chr8 (3 HSPs)
chr8 (1-49)||(23857348-23857396)
chr8 (1-52)||(5184909-5184959)
chr8 (3-51)||(17987472-17987519)
[»] chr7 (2 HSPs)
chr7 (1-49)||(24396968-24397015)
chr7 (3-39)||(25818311-25818346)
[»] scaffold0036 (1 HSPs)
scaffold0036 (1-52)||(25049-25099)
[»] chr4 (4 HSPs)
chr4 (1-52)||(3465606-3465656)
chr4 (1-52)||(32885711-32885761)
chr4 (1-52)||(53815719-53815769)
chr4 (1-49)||(48309168-48309215)
[»] chr2 (2 HSPs)
chr2 (1-52)||(25731957-25732007)
chr2 (4-52)||(36413786-36413833)
[»] chr1 (3 HSPs)
chr1 (1-52)||(38021275-38021325)
chr1 (1-51)||(23930567-23930616)
chr1 (1-51)||(24014631-24014680)


Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 62 - 440
Target Start/End: Original strand, 4277191 - 4277571
Alignment:
Q  62 gaatactgatttgtaatcaagtagggaaaagtccaaaatttggcttaatatggattagcttttatcttattagagcttttgaatcatattagcttatgtt 161  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |    
T  4277191 gaatactgatttgtaatcaagtagggaaaagtccaacatttgggttaatatggattagcttttatcttatgagagcttttcaatcatattagcttatgat 4277290  T
Q  162 acttaacttacaaattagtccttcaaattagnnnnnnnnnacaattaaaataagaaagtttatactattgtgtagctatgagaat--nnnnnnncaaaag 259  Q
    ||||||||||||||||||||||||||||||          |||||||| ||||||||||||||||| ||||||||||||||||||         ||||||    
T  4277291 acttaacttacaaattagtccttcaaatta--atttttttacaattaagataagaaagtttatacttttgtgtagctatgagaataaaaaaaatcaaaag 4277388  T
Q  260 aagctctgaaagagaaatctccatgtgaatgaagagactagagttactggatacaaatattgcaaatcaaatctcaacccacatgaagtttcctcttact 359  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  4277389 aagctttgaaagagaaatctccatgtgaatgaagagactagagtcactggatacaaatattgcaaatcaaatctcaacgcacatgaagtttcctcttact 4277488  T
Q  360 atactaatgtgtatactgatattacacat---tcgtatataaagactnnnnnnnttctataaactatattatgtgggacttttt 440  Q
    |||||||| |||| |||  |||||| |||   | |||||||||||||       |||||||||||||| |||||| ||||||||    
T  4277489 atactaatatgtaaactcttattactcattaattgtatataaagact-caaaaattctataaactatactatgtgagacttttt 4277571  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 17305542 - 17305590
Alignment:
Q  4 atgcattattatatgcagggggctggagttcgaaccatggacaccccac 52  Q
    ||||||||||||||||||||||| || ||||||| | ||||||||||||    
T  17305542 atgcattattatatgcagggggcaggggttcgaatcctggacaccccac 17305590  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 11636686 - 11636736
Alignment:
Q  1 acaatgcattattatatgcagggggctggagttcgaaccatggacaccccac 52  Q
    |||||||||||||||||||||||| | ||||||||||||  |||||||||||    
T  11636686 acaatgcattattatatgcaggggtc-ggagttcgaaccccggacaccccac 11636736  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 12089120 - 12089170
Alignment:
Q  1 acaatgcattattatatgcagggggctggagttcgaaccatggacaccccac 52  Q
    |||||||||||||||||||| ||||| ||||||||||||  |||||||||||    
T  12089120 acaatgcattattatatgca-ggggccggagttcgaaccccggacaccccac 12089170  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 14981774 - 14981724
Alignment:
Q  1 acaatgcattattatatgcagggggctggagttcgaaccatggacaccccac 52  Q
    |||||||||||||||||||| ||||| || ||||||||| ||||||||||||    
T  14981774 acaatgcattattatatgca-ggggccggggttcgaaccctggacaccccac 14981724  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 188
Target Start/End: Original strand, 24274141 - 24274180
Alignment:
Q  149 attagcttatgttacttaacttacaaattagtccttcaaa 188  Q
    |||| |||||||||||||||||||||| ||||||||||||    
T  24274141 attaacttatgttacttaacttacaaaatagtccttcaaa 24274180  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 25020597 - 25020550
Alignment:
Q  4 atgcattattatatgcagggggctggagttcgaaccatggacaccccac 52  Q
    ||||||||||||||||||||| |||| |||||||||  |||||||||||    
T  25020597 atgcattattatatgcaggggcctgg-gttcgaaccccggacaccccac 25020550  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 111 - 174
Target Start/End: Complemental strand, 24090995 - 24090932
Alignment:
Q  111 atggattagcttttatcttattagagcttttgaatcatattagcttatgttacttaacttacaa 174  Q
    |||||||||| | ||||| || ||||||||| ||||| ||||||||||||||||||||||||||    
T  24090995 atggattagcctatatctgatgagagcttttcaatcaaattagcttatgttacttaacttacaa 24090932  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 14417891 - 14417941
Alignment:
Q  1 acaatgcattattatatgcagggggctggagttcgaaccatggacaccccac 52  Q
    |||||||||||||||||||| ||||||||||||||||||  |||||||||||    
T  14417891 acaatgcattattatatgca-ggggctggagttcgaaccccggacaccccac 14417941  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 33206780 - 33206830
Alignment:
Q  1 acaatgcattattatatgcagggggctggagttcgaaccatggacaccccac 52  Q
    |||||||||||||||||||| |||||||| |||||||||  |||||||||||    
T  33206780 acaatgcattattatatgca-ggggctggggttcgaaccccggacaccccac 33206830  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 47191396 - 47191446
Alignment:
Q  1 acaatgcattattatatgcagggggctggagttcgaaccatggacaccccac 52  Q
    |||||||||||||||||||| ||||||||||||||||||  | |||||||||    
T  47191396 acaatgcattattatatgca-ggggctggagttcgaaccccgaacaccccac 47191446  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 3955329 - 3955381
Alignment:
Q  1 acaatgcattattatatgca-gggggctggagttcgaaccatggacaccccac 52  Q
    |||||||||||||||||||| |||||| || |||||||||  |||||||||||    
T  3955329 acaatgcattattatatgcaggggggccggggttcgaaccccggacaccccac 3955381  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 23857396 - 23857348
Alignment:
Q  1 acaatgcattattatatgcagggggctggagttcgaaccatggacaccc 49  Q
    |||||||||||||||||||||||||| || |||||||||  ||||||||    
T  23857396 acaatgcattattatatgcagggggccggggttcgaacctcggacaccc 23857348  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 5184959 - 5184909
Alignment:
Q  1 acaatgcattattatatgcagggggctggagttcgaaccatggacaccccac 52  Q
    |||||| ||||||||||||||||| |||| ||||||||| ||||||||||||    
T  5184959 acaatggattattatatgcagggg-ctggggttcgaaccctggacaccccac 5184909  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 17987519 - 17987472
Alignment:
Q  3 aatgcattattatatgcagggggctggagttcgaaccatggacacccca 51  Q
    |||||||||||||||||| ||||| ||||||||||||  ||||||||||    
T  17987519 aatgcattattatatgca-ggggccggagttcgaaccccggacacccca 17987472  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 24396968 - 24397015
Alignment:
Q  1 acaatgcattattatatgcagggggctggagttcgaaccatggacaccc 49  Q
    |||||||||||||||||||||||| | |||||||||||| |||||||||    
T  24396968 acaatgcattattatatgcaggggtc-ggagttcgaaccctggacaccc 24397015  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 25818311 - 25818346
Alignment:
Q  3 aatgcattattatatgcagggggctggagttcgaacc 39  Q
    |||||||||||||||||| ||||||||||||||||||    
T  25818311 aatgcattattatatgca-ggggctggagttcgaacc 25818346  T

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Target: scaffold0036 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 25049 - 25099
Alignment:
Q  1 acaatgcattattatatgcagggggctggagttcgaaccatggacaccccac 52  Q
    |||||||||||||||||||| |||||||| |||||||||  |||||||||||    
T  25049 acaatgcattattatatgca-ggggctggggttcgaaccccggacaccccac 25099  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 3465606 - 3465656
Alignment:
Q  1 acaatgcattattatatgcagggggctggagttcgaaccatggacaccccac 52  Q
    |||||||||||||||||||| ||||| ||||||||||||  |||||||||||    
T  3465606 acaatgcattattatatgca-ggggccggagttcgaaccccggacaccccac 3465656  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 32885711 - 32885761
Alignment:
Q  1 acaatgcattattatatgcagggggctggagttcgaaccatggacaccccac 52  Q
    |||||||||||||||||||||||| | ||||||||||||  |||||||||||    
T  32885711 acaatgcattattatatgcaggggtc-ggagttcgaacctcggacaccccac 32885761  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 53815719 - 53815769
Alignment:
Q  1 acaatgcattattatatgcagggggctggagttcgaaccatggacaccccac 52  Q
    |||||||||||||||||||| |||||||| |||||||||  |||||||||||    
T  53815719 acaatgcattattatatgca-ggggctggggttcgaaccccggacaccccac 53815769  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 48309168 - 48309215
Alignment:
Q  1 acaatgcattattatatgcagggggctggagttcgaaccatggacaccc 49  Q
    |||||||||||||||||||||||| || ||||||||||| || ||||||    
T  48309168 acaatgcattattatatgcaggggtct-gagttcgaaccctgaacaccc 48309215  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 25731957 - 25732007
Alignment:
Q  1 acaatgcattattatatgcagggggctggagttcgaaccatggacaccccac 52  Q
    |||||||||||||||||||||||| | ||||||||||||  |||||||||||    
T  25731957 acaatgcattattatatgcaggggtc-ggagttcgaacctcggacaccccac 25732007  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 36413786 - 36413833
Alignment:
Q  4 atgcattattatatgcagggggctggagttcgaaccatggacaccccac 52  Q
    ||||||| ||||||||||||| | |||||||||||| ||||||||||||    
T  36413786 atgcattgttatatgcaggggcc-ggagttcgaaccctggacaccccac 36413833  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 38021275 - 38021325
Alignment:
Q  1 acaatgcattattatatgcagggggctggagttcgaaccatggacaccccac 52  Q
    |||||||||||||||||||| ||||| ||||||||||||  |||||||||||    
T  38021275 acaatgcattattatatgca-ggggccggagttcgaaccccggacaccccac 38021325  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 23930616 - 23930567
Alignment:
Q  1 acaatgcattattatatgcagggggctggagttcgaaccatggacacccca 51  Q
    |||||||||||||||||||||||| | || ||||||||| |||||||||||    
T  23930616 acaatgcattattatatgcaggggtc-ggggttcgaaccctggacacccca 23930567  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 24014680 - 24014631
Alignment:
Q  1 acaatgcattattatatgcagggggctggagttcgaaccatggacacccca 51  Q
    |||||||||||||||||||| ||||| |||||||||||  |||||||||||    
T  24014680 acaatgcattattatatgca-ggggccggagttcgaactctggacacccca 24014631  T

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