View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17516_high_9 (Length: 427)
Name: NF17516_high_9
Description: NF17516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17516_high_9 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 17 - 402
Target Start/End: Original strand, 26097120 - 26097505
Alignment:
| Q |
17 |
actagataattaggtataccaactctcttgatattggtgaaccagacctcgaggatctccttcacatttgagtttgcaagggtaacaataatctctcgtt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
26097120 |
actagataattaggtataccaactctcttgatattggtgaaccagacctcgaggatctccttcacatttgagtttgcaagggtaactataatctctcgtt |
26097219 |
T |
|
| Q |
117 |
taactgcgattttctctaatatctttgccaatcttgggttcacggattcatcaggagcaacattaggattggttcttattgccttgacagtaccaaaagg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
26097220 |
taactgcgattttctctaatatctttgccaatcttgggttcacggattcatcaggagcaacattaggactggttcttattgccttgacagtaccaaaagg |
26097319 |
T |
|
| Q |
217 |
tccagctttttcctctttaactgatgcaatatggtctttcccttgctcttcaagccgaagcctttccgtcatctccctcaactgttttttcagctctgca |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26097320 |
tccagctttttcctctttaactgatgcaatatggtctttcccttgctctgcaagccgaagcctttccgtcatctccctcaactgttttttcagctctgca |
26097419 |
T |
|
| Q |
317 |
tttttatctgataacagtgccacaaattctgattttaacatgttaactctatctgatgattcacattcagctgaattttcctgcca |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26097420 |
tttttatctgataacagtgccacaaattctgattttaacatgttaactctatctgatgattcacattcagctgaattttcctgcca |
26097505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 17 - 402
Target Start/End: Original strand, 26065120 - 26065520
Alignment:
| Q |
17 |
actagataattaggtataccaactctcttgatattggtgaaccagacctcgaggatctccttcacatttgagtttgcaagggtaacaataatctctcgtt |
116 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| ||||||||||| || ||||||||||| ||||| ||||||||||||| ||| || |||||| ||| |
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|
| T |
26065120 |
actagataattagatataccaactctcttgatattagtgaaccagacttccaggatctccttaacattggagtttgcaagggcaactatgatctcttgtt |
26065219 |
T |
|
| Q |
117 |
taactgcgattttctctaatatctttgccaatcttgggttcacggattcatcaggagcaacattaggattggttcttattgccttgacagtaccaaaagg |
216 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
26065220 |
taactgcgattttatctaatatatttgccaatctcgggttcacggattcatcaggagcaacattaggattggttcttaatgccttgacagtaccaaaagg |
26065319 |
T |
|
| Q |
217 |
tccagctttttcctctttaactgatgcaa---------------tatggtctttcccttgctcttcaagccgaagcctttccgtcatctccctcaactgt |
301 |
Q |
| |
|
|||||||||||||| |||| || |||||| |||||||| ||||||||| ||||| ||||||||||||||| ||| |||| ||| |
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|
| T |
26065320 |
tccagctttttcctgtttacctaatgcaagcaacattttttctgcctggtcttttccttgctctgcaagctgaagcctttccgtcaactcactcacttgt |
26065419 |
T |
|
| Q |
302 |
tttttcagctctgcatttttatctgataacagtgccacaaattctgattttaacatgttaactctatctgatgattcacattcagctgaattttcctgcc |
401 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||| |||| |||||| ||||||||| |
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|
| T |
26065420 |
tttttcagctctgcatttttatctgataagagcgccacaaattctgattttaacatgttaactttatctgatgattcagattctgctgaactttcctgcc |
26065519 |
T |
|
| Q |
402 |
a |
402 |
Q |
| |
|
| |
|
|
| T |
26065520 |
a |
26065520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 17 - 340
Target Start/End: Original strand, 26120407 - 26120745
Alignment:
| Q |
17 |
actagataattaggtataccaactctcttgatattggtgaaccagacctcgaggatctccttcacatttgagtttgcaagggtaacaataatctctcgtt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| || |||||||||| |
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|
| T |
26120407 |
actagataattaggtataccaactctcttgatattggtgaaccagatctcgaggatctctttcacatttgagtttgcaagggtaactatgatctctcgtt |
26120506 |
T |
|
| Q |
117 |
taactgcgattttctctaatatctttgccaatcttgggttcacggattcatcaggagcaacattaggattggttcttattgccttgacagtaccaaaagg |
216 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
26120507 |
taactgcgattttctctaataaatttgccaatctcgggttcacggattcatcaggagcaacaataggattggttcttaatgccttgacagtaccaaaagg |
26120606 |
T |
|
| Q |
217 |
tccagctttttcctctttaactgatgcaa---------------tatggtctttcccttgctcttcaagccgaagcctttccgtcatctccctcaactgt |
301 |
Q |
| |
|
|||||||||||||| ||||||| |||||| | |||||||||||||||||| ||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
26120607 |
tccagctttttcctgtttaactaatgcaagaaactctttttctgtctggtctttcccttgctctgcaatccgaagcctttccgtcaactccctcaactgt |
26120706 |
T |
|
| Q |
302 |
tttttcagctctgcatttttatctgataacagtgccaca |
340 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
26120707 |
ttttttagctctgcatttttatctgataaaagtgccaca |
26120745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 17 - 316
Target Start/End: Original strand, 26127064 - 26127363
Alignment:
| Q |
17 |
actagataattaggtataccaactctcttgatattggtgaaccagacctcgaggatctccttcacatttgagtttgcaagggtaacaataatctctcgtt |
116 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||| ||||| ||||||||||||| ||| || |||||||| | |
|
|
| T |
26127064 |
actaaataattaggtataccgactctcttgatattggtgaaccagacctcgagggtttccttaacattggagtttgcaagggcaactatgatctctcggt |
26127163 |
T |
|
| Q |
117 |
taactgcgattttctctaatatctttgccaatcttgggttcacggattcatcaggagcaacattaggattggttcttattgccttgacagtaccaaaagg |
216 |
Q |
| |
|
| ||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
26127164 |
ttactgcaattttctctaataaatttgccaatctcgggttcacggattcatcaggagcaacattaggattggttcttaatgccttgacagtaccaaaagg |
26127263 |
T |
|
| Q |
217 |
tccagctttttcctctttaactgatgcaatatggtctttcccttgctcttcaagccgaagcctttccgtcatctccctcaactgttttttcagctctgca |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||| ||||||||| |
|
|
| T |
26127264 |
tccagctttttcctctttaactgatgcaatatggtctttcccttgctctgcaagccgaagcctttccctcaactccctcaactgtttttttagctctgca |
26127363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 17 - 402
Target Start/End: Original strand, 26036472 - 26036869
Alignment:
| Q |
17 |
actagataattaggtataccaactctcttgatattggtgaaccagacctcgaggatctccttcacatttgagtttgcaagggtaacaataatctctcgtt |
116 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| | |||||||||||| | |||||||||||||| || |||||||| | || || |||||||||| |
|
|
| T |
26036472 |
actagataattagatataccaactctcttgatatttgagaaccagacctctaacatctccttcacattggaatttgcaagtgctactatgatctctcgtt |
26036571 |
T |
|
| Q |
117 |
taactgcgattttctctaatatctttgccaatcttgggttcacggattcatcaggagcaacattaggattggttcttattgccttgacagtaccaaaagg |
216 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
26036572 |
taactgagattttctccaatatctttgccaatcttggattcacggattcatcaggaacaacagtaggattggttcttaatcccttgacagtaccaaaagg |
26036671 |
T |
|
| Q |
217 |
tccagctttttcctctttaactgatgcaata---------------tggtctttcccttgctcttcaagccgaagcctttccgtcatctccctcaactgt |
301 |
Q |
| |
|
|||||||||||| | |||| || |||||| | |||||||||||||||||| |||||||||||||||| |||| |||||||| |||| |
|
|
| T |
26036672 |
tccagctttttcttgtttacctaatgcaagaaattgtttttgagcctggtctttcccttgctctgcaagccgaagcctttctgtcaactccctcacctgt |
26036771 |
T |
|
| Q |
302 |
tttttcagctctgcatttttatctgataacagtgccacaaattctgattttaacatgttaactctatctgatgattcacattcagctgaattttcctgcc |
401 |
Q |
| |
|
||||||||||| || ||||| |||||| | ||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
26036772 |
tttttcagctcagcgtttttgtctgat---actgccacaaactctgatttcaacatgttgactctatctgatgattcacattcagctgagttttcctgcc |
26036868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 17 - 235
Target Start/End: Original strand, 26084845 - 26085063
Alignment:
| Q |
17 |
actagataattaggtataccaactctcttgatattggtgaaccagacctcgaggatctccttcacatttgagtttgcaagggtaacaataatctctcgtt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
26084845 |
actagataattaggtataccaactctcttgatattggtgaaccagacctcgagcattgccttcacatttgagtttgcaagggtaactatgatctctcgtt |
26084944 |
T |
|
| Q |
117 |
taactgcgattttctctaatatctttgccaatcttgggttcacggattcatcaggagcaacattaggattggttcttattgccttgacagtaccaaaagg |
216 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||||| | ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
26084945 |
taactgcgattttctctaataaatttgccaatctcgggttcaagaattcatcaggagcaacagtaggattggttcttaatgccttgacagtaccaaaagg |
26085044 |
T |
|
| Q |
217 |
tccagctttttcctcttta |
235 |
Q |
| |
|
|||||||||||||| |||| |
|
|
| T |
26085045 |
tccagctttttcctgttta |
26085063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 280 - 402
Target Start/End: Original strand, 26085102 - 26085224
Alignment:
| Q |
280 |
ttccgtcatctccctcaactgttttttcagctctgcatttttatctgataacagtgccacaaattctgattttaacatgttaactctatctgatgattca |
379 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26085102 |
ttccgtcaactccctcacctgttttttcagctctgcatttttatctgataagagtgccacaaattctgattttaacatgttaactctatctgatgattca |
26085201 |
T |
|
| Q |
380 |
cattcagctgaattttcctgcca |
402 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
26085202 |
gattcagctgaattttcctgcca |
26085224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 140 - 222
Target Start/End: Original strand, 6773916 - 6773998
Alignment:
| Q |
140 |
tttgccaatcttgggttcacggattcatcaggagcaacattaggattggttcttattgccttgacagtaccaaaaggtccagc |
222 |
Q |
| |
|
||||||||||| |||||||| || ||||| ||| |||| |||||| ||||| | |||||||||||||||||||| ||||| |
|
|
| T |
6773916 |
tttgccaatctagggttcactgactcatcgggaataacagaaggatttgttctgagagccttgacagtaccaaaaggaccagc |
6773998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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