View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17516_low_11 (Length: 425)
Name: NF17516_low_11
Description: NF17516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17516_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 38832246 - 38831847
Alignment:
| Q |
1 |
taggagttaggagataactctgtctaccaggtattaagttttatattgagtcaaaccaatcatcacaaaacatgtttgtaatgcaagagatatttgtttc |
100 |
Q |
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| T |
38832246 |
taggtgttgggagataactctgtctaccaggtattaagttttatattgagtcaaaccaatcatcacaaaacatgtttgtaatgcaagagatatttgtttc |
38832147 |
T |
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| Q |
101 |
tataatgagtcnnnnnnnttgactatatgatttccaaaatcagtaattagtgtggggttagaaaaacaaaaagatcactcaccgacaaaagaatctttat |
200 |
Q |
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| T |
38832146 |
tataatgagtcaaaaat-ttgactatatgatttccaaaatcagtaattagtgtggggttagaaaaacaaaaagatcactcaccgacaaaagaatctt--- |
38832051 |
T |
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| Q |
201 |
cttcacctttctatactttctttttcaacttcttttcatccccattgacgacattatcacattattctcatctctaacaatgcctccgtcgtattttcct |
300 |
Q |
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| T |
38832050 |
---cacctttctatactttctttttcaactttttttcatccccattgacgacattatcacattattctcatctctaacaatgcctccgtcttattttcct |
38831954 |
T |
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| Q |
301 |
ctccgttgggaaagcacaggacaacaatggtggtacgcatcaccaatcgatttagcagcagcaaatggccactacgatctcgtcattgagcttcttcacc |
400 |
Q |
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| T |
38831953 |
ctccgttgggaaagcacaggacaacaatggtggtacgcatcaccaatcgatttagcagcagcaaatggccactacgatctcgtcattgagcttcttcacc |
38831854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 295 - 368
Target Start/End: Original strand, 34396857 - 34396930
Alignment:
| Q |
295 |
tttcctctccgttgggaaagcacaggacaacaatggtggtacgcatcaccaatcgatttagcagcagcaaatgg |
368 |
Q |
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| T |
34396857 |
tttcctctacgttgggagagcacaggagaccaatggtggtatgcaacacctattgatttagcagctgcaaatgg |
34396930 |
T |
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