View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17516_low_12 (Length: 403)
Name: NF17516_low_12
Description: NF17516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17516_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 18 - 391
Target Start/End: Complemental strand, 30139619 - 30139246
Alignment:
| Q |
18 |
atattagccattatggcaattgttgctttcatgttaagacgttacagtaatgttaaggtaagggctgaattagcatataggaggaaattttggagaaata |
117 |
Q |
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| T |
30139619 |
atattagccattatggcaattgttgctttcatgttaagacgttacagtaatgttaaggtaagggctgaattagcatataggaggaaattttggagaaata |
30139520 |
T |
|
| Q |
118 |
tgatgagaggagctttgacatatgaggagtgggctcatgcatcaagaatgcttgataaggagacaccaaagatgaatgaatcagatttttatgatgtaga |
217 |
Q |
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| T |
30139519 |
tgatgagaggagctttgacatatgaggagtgggctcatgcatcaagaatgcttgataaggagacaccaaagatgaatgaatcagatttttatgatgtaga |
30139420 |
T |
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| Q |
218 |
attggtaaggaacaagcttgaagaattacgacatcgcagacaagaggggtgtcttagagatattatattttgtatgagagctgatcttattagaaatcta |
317 |
Q |
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| T |
30139419 |
attggtaaggaacaagcttgaagaattacgacatcgcagacaagaggggtgtcttagagatattatattttgtatgagagctgatcttattagaaatcta |
30139320 |
T |
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| Q |
318 |
ggtaatatgtgtaaccctgagcttcataaaggtaggcttcatgtgcctagacagattaaggagtatattgatga |
391 |
Q |
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| T |
30139319 |
ggtaatatgtgtaaccctgagcttcataaaggtaggcttcatgtgcctagacagattaaggagtatattgatga |
30139246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 42 - 391
Target Start/End: Original strand, 39129075 - 39129430
Alignment:
| Q |
42 |
gctttcatgttaagacgttacagtaatgttaaggtaagggctgaattagcatataggaggaaattttggagaaatatgatgagaggagctttgacatatg |
141 |
Q |
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| T |
39129075 |
gctttcttgttaaaacgttacagtaatgttaaagtaagagctgaattagcatacaggagaaaattttggagaaatatgatgagatcagctttgacttatg |
39129174 |
T |
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| Q |
142 |
aggagtgggctcatgcatcaagaatgcttgataaggagacacca------aagatgaatgaatcagatttttatgatgtagaattggtaaggaacaagct |
235 |
Q |
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||||||||||||||||| | | ||||||||||| ||||| || | |||||||||||| |||||||| |||||||||||||| ||||| ||| | |
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| T |
39129175 |
aggagtgggctcatgcagctaagatgcttgataaagagacgacattgaagacgatgaatgaatccgatttttacgatgtagaattggttaggaataaggt |
39129274 |
T |
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| Q |
236 |
tgaagaattacgacatcgcagacaagaggggtgtcttagagatattatattttgtatgagagctgatcttattagaaatctaggtaatatgtgtaaccct |
335 |
Q |
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| T |
39129275 |
tcaagagttacgacatcgtagacaagaggggtctcttagagatattatcttttgtatgagagctgatcttgttagaaatttaggtaatatgtgtaaccct |
39129374 |
T |
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| Q |
336 |
gagcttcataaaggtaggcttcatgtgcctagacagattaaggagtatattgatga |
391 |
Q |
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| T |
39129375 |
cagcttcataaaggtaggcttcatgtgccgagacagattaaggagtatattgatga |
39129430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 56 - 358
Target Start/End: Complemental strand, 35605815 - 35605513
Alignment:
| Q |
56 |
acgttacagtaatgttaaggtaagggctgaattagcatataggaggaaattttggagaaatatgatgagaggagctttgacatatgaggagtgggctcat |
155 |
Q |
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|||||||| ||||| || || ||||||||| | || |||||||| |||||||||||||||||||||||| | |||||||| ||||| |||||||||||| |
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| T |
35605815 |
acgttacacaaatgtgaaagttagggctgaaatggcttataggagaaaattttggagaaatatgatgagaagtgctttgacctatgatgagtgggctcat |
35605716 |
T |
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| Q |
156 |
gcatcaagaatgcttgataaggagacaccaaagatgaatgaatcagatttttatgatgtagaattggtaaggaacaagcttgaagaattacgacatcgca |
255 |
Q |
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| T |
35605715 |
ggagctaagatgcttgataagttgactccaaagatgaacgaatcagatctttatgacgttgaattggttgggaacaagcttcaagagcttcgtagccgtc |
35605616 |
T |
|
| Q |
256 |
gacaagaggggtgtcttagagatattatattttgtatgagagctgatcttattagaaatctaggtaatatgtgtaaccctgagcttcataaaggtaggct |
355 |
Q |
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|||||||||||| ||||||||||||||| ||||||||| | ||||||||| || ||||| ||||||||||||||||||| || || || || |||||||| |
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| T |
35605615 |
gacaagaggggtctcttagagatattatgttttgtatgcgtgctgatcttgttcgaaatttaggtaatatgtgtaacccggaactacacaagggtaggct |
35605516 |
T |
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| Q |
356 |
tca |
358 |
Q |
| |
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||| |
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| T |
35605515 |
tca |
35605513 |
T |
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