View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17516_low_13 (Length: 388)
Name: NF17516_low_13
Description: NF17516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17516_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 23 - 358
Target Start/End: Original strand, 28122347 - 28122682
Alignment:
| Q |
23 |
tgccggtcacctatgatatgtctacacttttcgactcaatgggacaaccttcattctccatgcaacaacagaggtccagtattgatccacgtcaatactt |
122 |
Q |
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| T |
28122347 |
tgccggtcacctatgatatgtctacacttttcgactcaatgggacaaccttcattctccatgcaacaacagaggtccagtattgatccacgtcaatactt |
28122446 |
T |
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| Q |
123 |
agctgctcatcatcatgccccaacatcaaccacttctgggattcaatcagtggcatgtgaccttactcatagacaaattggctcttcatctgtaccatcc |
222 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28122447 |
agctgctcatcatcatgccccaacatcaaccactgctgggattcaatcagtggcatgtgaccttactcatagacaaattggctcttcatctgtaccatcc |
28122546 |
T |
|
| Q |
223 |
tccaatgcctcatcatctgcttcgttttccaaattttctaaatgatcagtcatgttttgaatataatacattaatatattctgttgtctgttacaaaaat |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
28122547 |
tccaatgcctcatcatctgcttcgttttccaaattttctaaatgatcattcatgttttgaatataatacattaatatattctgttgtctattacaaaaat |
28122646 |
T |
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| Q |
323 |
ctgtctttcttttttcatccttcggccagacatggg |
358 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
28122647 |
ctgtctttcttttttcatccttcggccagacatggg |
28122682 |
T |
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