View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17516_low_17 (Length: 359)
Name: NF17516_low_17
Description: NF17516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17516_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 19 - 345
Target Start/End: Original strand, 1328926 - 1329252
Alignment:
| Q |
19 |
aataattgaaggtatgggtgttaaaggtgagtttttctgttgtgaggtcgcaatttataagaaaaatcttcttccaattggccgaattaagaattagttg |
118 |
Q |
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| T |
1328926 |
aataattgaaggtatgggtgttaaaggtgagtctttctgttgtgaggtcgcaatttataagaaaaatcttcttccaattggccgaattaagaattagttg |
1329025 |
T |
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| Q |
119 |
tatttggatcccaagtttaaagctttcatactgttagannnnnnnagtttattatgacgtatgaagtgtatgaaaaagaaacatgtagcatatgatttgt |
218 |
Q |
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| T |
1329026 |
tatttggatcccaagtttaaagctttcatactgttagatttttttagtttattatgacgtatgaagtgtatgaaaaagaaacatgtagcatatgatttgt |
1329125 |
T |
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| Q |
219 |
tcttaagtctttaccatttctatttccatgctcttctctcttttctattgcataatgttcttctatccattccagttgtaagcatggtattttatcttta |
318 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
1329126 |
tcttaagtctttaccatttctatttccacgctcttctctcttttctattgcataatgttcttctatccattccaattgtaagcatggtattttatcttta |
1329225 |
T |
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| Q |
319 |
ttgaatgctcgcaattgcaagtctgtg |
345 |
Q |
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| T |
1329226 |
ttgaatgctcgcaattgcaagtctgtg |
1329252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 22 - 146
Target Start/End: Original strand, 44187593 - 44187717
Alignment:
| Q |
22 |
aattgaaggtatgggtgttaaaggtgagtttttctgttgtgaggtcgcaatttataagaaaaatcttcttccaattggccgaattaagaattagttgtat |
121 |
Q |
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| T |
44187593 |
aattgaagatatgggtgttaaaggcgagcctttctgttgtgaggtggcaatttgtaaaaaaaatcttattcctgttggctgaattaagaattagttgtac |
44187692 |
T |
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| Q |
122 |
ttggatcccaagtttaaagctttca |
146 |
Q |
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| T |
44187693 |
ttgcattccaagtttaaagctttca |
44187717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 226 - 323
Target Start/End: Original strand, 44187879 - 44187976
Alignment:
| Q |
226 |
tctttaccatttctatttccatgctcttctctcttttctattgcataatgttcttctatccattccagttgtaagcatggtattttatctttattgaa |
323 |
Q |
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| T |
44187879 |
tctttaccatttttatttctatgtttttctctcttttctattgtatattgttcttctttcgattccaattgtaagcatagtattttgtctttattgaa |
44187976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 280
Target Start/End: Original strand, 4878422 - 4878476
Alignment:
| Q |
226 |
tctttaccatttctatttccatgctcttctctcttttctattgcataatgttctt |
280 |
Q |
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| T |
4878422 |
tctttaccatttttatttcaatgctctgctctctttcatattgcatattgttctt |
4878476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 91
Target Start/End: Original strand, 44186284 - 44186353
Alignment:
| Q |
22 |
aattgaaggtatgggtgttaaaggtgagtttttctgttgtgaggtcgcaatttataagaaaaatcttctt |
91 |
Q |
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| T |
44186284 |
aattgaagatctgggtgttaaaggggagtatttttgttgtcactttgcaatttataagaaaaaccttctt |
44186353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 282
Target Start/End: Original strand, 26542408 - 26542464
Alignment:
| Q |
226 |
tctttaccatttctatttccatgctcttctctcttttctattgcataatgttcttct |
282 |
Q |
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| T |
26542408 |
tctttaccatttttatttccacgctcttatcttttttctattgtatgatgttcttct |
26542464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 144
Target Start/End: Original strand, 6432798 - 6432874
Alignment:
| Q |
68 |
gcaatttataagaaaaatcttcttccaattggccgaattaagaattagttgtatttggatcccaagtttaaagcttt |
144 |
Q |
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| T |
6432798 |
gcaatttataggaaaaactttcttccaattggtcgaaagaggagttagttatttttgcatctcaagtttaaagcttt |
6432874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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