View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17516_low_19 (Length: 344)

Name: NF17516_low_19
Description: NF17516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17516_low_19
NF17516_low_19
[»] chr5 (5 HSPs)
chr5 (75-146)||(18850479-18850550)
chr5 (63-146)||(4310335-4310418)
chr5 (96-145)||(41019044-41019093)
chr5 (90-145)||(18849542-18849597)
chr5 (95-144)||(4017112-4017161)
[»] chr3 (4 HSPs)
chr3 (63-145)||(28684982-28685062)
chr3 (97-145)||(14017143-14017191)
chr3 (97-146)||(33522797-33522846)
chr3 (97-145)||(52702593-52702641)
[»] chr4 (3 HSPs)
chr4 (63-104)||(2328284-2328325)
chr4 (97-145)||(17541534-17541582)
chr4 (97-145)||(53338219-53338267)
[»] chr1 (3 HSPs)
chr1 (97-146)||(45601148-45601197)
chr1 (95-134)||(2533283-2533322)
chr1 (97-145)||(12299272-12299320)
[»] chr8 (3 HSPs)
chr8 (107-147)||(8785572-8785612)
chr8 (97-141)||(43245787-43245831)
chr8 (100-143)||(43244865-43244908)
[»] chr7 (1 HSPs)
chr7 (97-145)||(47891725-47891773)
[»] chr2 (3 HSPs)
chr2 (97-145)||(37348266-37348314)
chr2 (90-146)||(37349907-37349963)
chr2 (97-145)||(11853622-11853670)


Alignment Details
Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 75 - 146
Target Start/End: Original strand, 18850479 - 18850550
Alignment:
Q  75 aaatcaatggttgcaaatggacttgtgtattggtacacaaatttaacaatttgtgtaccttaaaagtcacct 146  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  18850479 aaatcaatggttacaaatggacttgtgtatgggtacacaaatttaacaatttgtgtaccttaaaagccacct 18850550  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 63 - 146
Target Start/End: Original strand, 4310335 - 4310418
Alignment:
Q  63 ttttaaatccacaaatcaatggttgcaaatggacttgtgtattggtacacaaatttaacaatttgtgtaccttaaaagtcacct 146  Q
    ||||| || |||||||||||| ||||||||||||||||| || |||||||||||  |||||||| |||||| |||||| |||||    
T  4310335 ttttatattcacaaatcaatgattgcaaatggacttgtgcatcggtacacaaatgaaacaatttatgtaccctaaaagccacct 4310418  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 41019044 - 41019093
Alignment:
Q  96 cttgtgtattggtacacaaatttaacaatttgtgtaccttaaaagtcacc 145  Q
    ||||||||| |||||||||||||||||||||||| ||| |||||||||||    
T  41019044 cttgtgtatgggtacacaaatttaacaatttgtgcaccctaaaagtcacc 41019093  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 18849597 - 18849542
Alignment:
Q  90 aatggacttgtgtattggtacacaaatttaacaatttgtgtaccttaaaagtcacc 145  Q
    ||||||||||||||| | |||||||||||||| ||||||||||| |||||| ||||    
T  18849597 aatggacttgtgtatggatacacaaatttaaccatttgtgtaccctaaaagccacc 18849542  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 144
Target Start/End: Original strand, 4017112 - 4017161
Alignment:
Q  95 acttgtgtattggtacacaaatttaacaatttgtgtaccttaaaagtcac 144  Q
    |||||||||| ||||||| |||||||  ||||||| ||||||||||||||    
T  4017112 acttgtgtatcggtacaccaatttaaatatttgtgcaccttaaaagtcac 4017161  T

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Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 63 - 145
Target Start/End: Complemental strand, 28685062 - 28684982
Alignment:
Q  63 ttttaaatccacaaatcaatggttgcaaatggacttgtgtattggtacacaaatttaacaatttgtgtaccttaaaagtcacc 145  Q
    ||||||| |||||||||||| ||| |||  |||||||||||| |||||||||||||||| | |||||||||||||||| ||||    
T  28685062 ttttaaaaccacaaatcaatcgttacaa--ggacttgtgtatgggtacacaaatttaaccacttgtgtaccttaaaagccacc 28684982  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 97 - 145
Target Start/End: Original strand, 14017143 - 14017191
Alignment:
Q  97 ttgtgtattggtacacaaatttaacaatttgtgtaccttaaaagtcacc 145  Q
    |||||||| |||||||||||||||||||||||| ||| |||||||||||    
T  14017143 ttgtgtatgggtacacaaatttaacaatttgtgcaccctaaaagtcacc 14017191  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 33522846 - 33522797
Alignment:
Q  97 ttgtgtattggtacacaaatttaacaatttgtgtaccttaaaagtcacct 146  Q
    |||||||| ||||||||||||||||||| |||  ||| ||||||||||||    
T  33522846 ttgtgtatgggtacacaaatttaacaatatgtacaccctaaaagtcacct 33522797  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 145
Target Start/End: Original strand, 52702593 - 52702641
Alignment:
Q  97 ttgtgtattggtacacaaatttaacaatttgtgtaccttaaaagtcacc 145  Q
    ||||| || ||||||||| |||||||||||||||||| |||| ||||||    
T  52702593 ttgtgcatgggtacacaagtttaacaatttgtgtaccctaaacgtcacc 52702641  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 2328284 - 2328325
Alignment:
Q  63 ttttaaatccacaaatcaatggttgcaaatggacttgtgtat 104  Q
    ||||| |||||||||||||||||| |||||||||||||||||    
T  2328284 ttttagatccacaaatcaatggttacaaatggacttgtgtat 2328325  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 145
Target Start/End: Complemental strand, 17541582 - 17541534
Alignment:
Q  97 ttgtgtattggtacacaaatttaacaatttgtgtaccttaaaagtcacc 145  Q
    ||||||||||||||||||||||||  |||| || |||||||||||||||    
T  17541582 ttgtgtattggtacacaaatttaatcatttatgcaccttaaaagtcacc 17541534  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 145
Target Start/End: Original strand, 53338219 - 53338267
Alignment:
Q  97 ttgtgtattggtacacaaatttaacaatttgtgtaccttaaaagtcacc 145  Q
    |||||||| ||| || |||||||||||||| |||| |||||||||||||    
T  53338219 ttgtgtatgggtgcataaatttaacaatttatgtatcttaaaagtcacc 53338267  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 45601148 - 45601197
Alignment:
Q  97 ttgtgtattggtacacaaatttaacaatttgtgtaccttaaaagtcacct 146  Q
    |||||||||||||||| |||||||  ||||||| ||||||||||||||||    
T  45601148 ttgtgtattggtacacgaatttaatcatttgtgcaccttaaaagtcacct 45601197  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 134
Target Start/End: Complemental strand, 2533322 - 2533283
Alignment:
Q  95 acttgtgtattggtacacaaatttaacaatttgtgtacct 134  Q
    |||||||||| ||||||||||||| |||||||||||||||    
T  2533322 acttgtgtatgggtacacaaattttacaatttgtgtacct 2533283  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 145
Target Start/End: Original strand, 12299272 - 12299320
Alignment:
Q  97 ttgtgtattggtacacaaatttaacaatttgtgtaccttaaaagtcacc 145  Q
    |||||||| |||| | ||||||||||||||||| ||| |||||||||||    
T  12299272 ttgtgtatgggtatataaatttaacaatttgtgcaccctaaaagtcacc 12299320  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 8785572 - 8785612
Alignment:
Q  107 gtacacaaatttaacaatttgtgtaccttaaaagtcacctt 147  Q
    |||||||||||||||||||||||| || |||||||||||||    
T  8785572 gtacacaaatttaacaatttgtgtgccctaaaagtcacctt 8785612  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 43245787 - 43245831
Alignment:
Q  97 ttgtgtattggtacacaaatttaacaatttgtgtaccttaaaagt 141  Q
    |||||||| |||||||||||||||||||||||| ||| |||||||    
T  43245787 ttgtgtatgggtacacaaatttaacaatttgtgcaccctaaaagt 43245831  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 143
Target Start/End: Complemental strand, 43244908 - 43244865
Alignment:
Q  100 tgtattggtacacaaatttaacaatttgtgtaccttaaaagtca 143  Q
    ||||| ||||||||||||||||||||||| |||| |||||||||    
T  43244908 tgtatgggtacacaaatttaacaatttgtataccctaaaagtca 43244865  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 145
Target Start/End: Complemental strand, 47891773 - 47891725
Alignment:
Q  97 ttgtgtattggtacacaaatttaacaatttgtgtaccttaaaagtcacc 145  Q
    |||||||| || ||||||||||||||||||||| ||| |||||||||||    
T  47891773 ttgtgtatgggcacacaaatttaacaatttgtgcaccctaaaagtcacc 47891725  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 145
Target Start/End: Complemental strand, 37348314 - 37348266
Alignment:
Q  97 ttgtgtattggtacacaaatttaacaatttgtgtaccttaaaagtcacc 145  Q
    |||||||| |||||||||||||||  ||||||| |||||||||||||||    
T  37348314 ttgtgtataggtacacaaatttaagcatttgtgcaccttaaaagtcacc 37348266  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 146
Target Start/End: Original strand, 37349907 - 37349963
Alignment:
Q  90 aatggacttgtgtattggtacacaaatttaacaatttgtgtaccttaaaagtcacct 146  Q
    |||| |||||||||| |||||||||||||| ||||||||| ||| |||||| |||||    
T  37349907 aatgcacttgtgtatgggtacacaaatttatcaatttgtgcaccctaaaagccacct 37349963  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 145
Target Start/End: Complemental strand, 11853670 - 11853622
Alignment:
Q  97 ttgtgtattggtacacaaatttaacaatttgtgtaccttaaaagtcacc 145  Q
    |||||||| |||||||| ||||| ||||||||||||| |||||| ||||    
T  11853670 ttgtgtatgggtacacagatttatcaatttgtgtaccctaaaagccacc 11853622  T

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