View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17516_low_20 (Length: 340)
Name: NF17516_low_20
Description: NF17516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17516_low_20 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 93 - 331
Target Start/End: Complemental strand, 24876807 - 24876569
Alignment:
| Q |
93 |
taaatatggaataatctaaagatggaaagtgcaaagaataatgcaaaggaatgtttactctaggataagagtaataataggatggagagtacatgagagg |
192 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24876807 |
taaatatggaataatctaaagatggaaaatgcaaagaataatgcaaaggaatgtttactctaggataagagtaataataggatggagagtacatgagagg |
24876708 |
T |
|
| Q |
193 |
tttataattgtttgaagtattgttcactcaatttttagcatgtacattactataaaatgtttaggagttttgtaatttagatatcacaacaaaacaaata |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24876707 |
tttataattgtttgaagtattgttcactcaatttttagcatatacattactataaaatgtttaggagttttgtaatttagatatcacaacaaaacaaata |
24876608 |
T |
|
| Q |
293 |
gagtgtaacaaagtgaatttattaattagaagttcatct |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24876607 |
gagtgtaacaaagtgaatttattaattagaagttcatct |
24876569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 93 - 331
Target Start/End: Complemental strand, 24881292 - 24881071
Alignment:
| Q |
93 |
taaatatggaataatctaaagatggaaagtgcaaagaataatgcaaaggaatgtttactctaggataagagtaataataggatggagagtacatgagagg |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
24881292 |
taaatatggaataatctaaagatggaaagtgcaaagaataacgcaaaggaatgtttactctaggataagagtaataataggatggaaagtatatgagagg |
24881193 |
T |
|
| Q |
193 |
tttataattgtttgaagtattgttcactcaatttttagcatgtacattactataaaatgtttaggagttttgtaatttagatatcacaacaaaacaaata |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |
|
|
| T |
24881192 |
tttataattgtttgaagtattgttcactcaatttttagcatgtacattacta-----------------ttgtaatttagatatcacaacaaaacaagta |
24881110 |
T |
|
| Q |
293 |
gagtgtaacaaagtgaatttattaattagaagttcatct |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24881109 |
gagtgtaacaaagtgaatttattaattagaagttcatct |
24881071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 93 - 331
Target Start/End: Original strand, 33698648 - 33698887
Alignment:
| Q |
93 |
taaatatggaataatctaaagatggaaagtgcaaagaataatgcaaaggaatgtttactctaggataagagtaataataggatggagagtacatgagagg |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33698648 |
taaatatggaataatctaaagatggaaagtgcaaagaataatgcaaaggaatgtttactctaggataagagtaataataggatggagagtacatgagagg |
33698747 |
T |
|
| Q |
193 |
tttataattgtttgaagtattgttcactcaa-tttttagcatgtacattactataaaatgtttaggagttttgtaatttagatatcacaacaaaacaaat |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
33698748 |
tttataattgtttgaagtattgttcactcaattttttagcatgtacattactataaaatgtttaggagttttgtaatttagatatcacaacaaaacaagt |
33698847 |
T |
|
| Q |
292 |
agagtgtaacaaagtgaatttattaattagaagttcatct |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33698848 |
agagtgtaacaaagtgaatttattaattagaagttcatct |
33698887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 93 - 331
Target Start/End: Original strand, 33681591 - 33681830
Alignment:
| Q |
93 |
taaatatggaataatctaaagatggaaagtgcaaagaataatgcaaaggaatgtttactctaggataagagtaataataggatggagagtacatgagagg |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33681591 |
taaatatggaataatctaaagatggaaagtgcaaagaataatgaaaaggaatgtttactctaggataagagtaataataggatggagagtacatgagagg |
33681690 |
T |
|
| Q |
193 |
tttataattgtttgaagtattgttcactcaa-tttttagcatgtacattactataaaatgtttaggagttttgtaatttagatatcacaacaaaacaaat |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
33681691 |
tttataattgtttgaagtattgttcactcaattttttagcatgtacattactataaaatgtttaggagttttgtaatttagatatcacaacaaaacaagt |
33681790 |
T |
|
| Q |
292 |
agagtgtaacaaagtgaatttattaattagaagttcatct |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33681791 |
agagtgtaacaaagtgaatttattaattagaagttcatct |
33681830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 93 - 331
Target Start/End: Complemental strand, 14088047 - 14087809
Alignment:
| Q |
93 |
taaatatggaataatctaaagatggaaagtgcaaagaataatgcaaaggaatgtttactctaggataagagtaataataggatggagagtacatgagagg |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14088047 |
taaatatggaataatctaaagatggaaagtgcaaagaataatgcaaaggaatgtttactctaggataagagtaataataggatggagagtacatgagagg |
14087948 |
T |
|
| Q |
193 |
tttataattgtttgaagtattgttcactcaatttttagcatgtacattactataaaatgtttaggagttttgtaatttagatatcacaacaaaacaaata |
292 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |
|
|
| T |
14087947 |
tttataattgtttgaattattgttcactcaatttttagcatgtacattactataaaatgtttaggagttttgtaatttagatatcacaataaaacaagta |
14087848 |
T |
|
| Q |
293 |
gagtgtaacaaagtgaatttattaattagaagttcatct |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14087847 |
gagtgtaacaaagtgaatttattaattagaagttcatct |
14087809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 93 - 331
Target Start/End: Complemental strand, 14092579 - 14092341
Alignment:
| Q |
93 |
taaatatggaataatctaaagatggaaagtgcaaagaataatgcaaaggaatgtttactctaggataagagtaataataggatggagagtacatgagagg |
192 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14092579 |
taaatatggaataatctaaagatggaaaatgcaaagaataatgcaaaggaatgtttactctaggataagagtaataataggatggagagtacatgagagg |
14092480 |
T |
|
| Q |
193 |
tttataattgtttgaagtattgttcactcaatttttagcatgtacattactataaaatgtttaggagttttgtaatttagatatcacaacaaaacaaata |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
14092479 |
tttataattgtttgaagtattgttcactcaatttttagcatgtacattattataaaatgtttaggagttttgtaatttagatatcacaacaaaacaagta |
14092380 |
T |
|
| Q |
293 |
gagtgtaacaaagtgaatttattaattagaagttcatct |
331 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
14092379 |
gagtgtaacaaagtgaatttatttattagaagttcatct |
14092341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 93 - 331
Target Start/End: Original strand, 9950119 - 9950358
Alignment:
| Q |
93 |
taaatatggaataatctaaagatggaaagtgcaaagaataatgcaaaggaatgtttactctaggataagagtaataataggatggagagtacatgagagg |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9950119 |
taaatatggaataatctaaagatggaaagtgcaaagaataatgtaaaggaatgtttactctaggataagagtaataataggatggagagtacatgagagg |
9950218 |
T |
|
| Q |
193 |
tttataattgtttgaagtattgttcactcaa-tttttagcatgtacattactataaaatgtttaggagttttgtaatttagatatcacaacaaaacaaat |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
9950219 |
tttataattgtttgaagtattgttcactcaattttttagcatgtacattactataaaatgtttaggagttttgtaatttagatatcacaacaaaacaagt |
9950318 |
T |
|
| Q |
292 |
agagtgtaacaaagtgaatttattaattagaagttcatct |
331 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
9950319 |
agagtgtaacatagtgaatttattaattagaagttcatct |
9950358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 91 - 328
Target Start/End: Original strand, 9955106 - 9955343
Alignment:
| Q |
91 |
agtaaatatggaataatctaaagatggaaagtgcaaagaataatgcaaaggaatgtttactctaggataagagtaataataggatggagagtacatgaga |
190 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
9955106 |
agtaaatatggaataatttaaagatggaaagtgcaaagaataatgtaaatgaatgtttactctaggataggagtaataataggatggagagtacatgaga |
9955205 |
T |
|
| Q |
191 |
ggtttataattgtttgaagtattgttcactcaatttttagcatgtacattactataaaatgtttaggagttttgtaatttagatatcacaacaaaacaaa |
290 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
9955206 |
ggtttataattgtttgaaatattgttcactcaatttttagcatgtacattactataaaatgtttaggagttttgtaatttagatatcacaaaaaaacaag |
9955305 |
T |
|
| Q |
291 |
tagagtgtaacaaagtgaatttattaattagaagttca |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9955306 |
tagagtgtaacaaagtgaatttattaattagaagttca |
9955343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 93 - 331
Target Start/End: Complemental strand, 32213837 - 32213605
Alignment:
| Q |
93 |
taaatatggaataatctaaagatggaaagtgcaaagaataatgcaaaggaatgtttactctaggataagagtaataataggatggagagtacatgagagg |
192 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||| | |||||||||||||||||| ||||||||||| |||| |
|
|
| T |
32213837 |
taaatatggaataatttaaagatggaaagtgtaaagaataatgcaaagg------tactctggaataagagtaataataggaaggagagtacatcagaga |
32213744 |
T |
|
| Q |
193 |
tttataattgtttgaagtattgttcactcaatttttagcatgtacattactataaaatgtttaggagttttgtaatttagatatcacaac-aaaacaaat |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| || ||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
32213743 |
tttataattgtttgaagtattgttcactcaatttttagaatgtacgttactataaaatgttcagaagttttgtattttagatatcacaacaaaaacaaat |
32213644 |
T |
|
| Q |
292 |
agagtgtaacaaagtgaatttattaattagaagttcatct |
331 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||| |||| |
|
|
| T |
32213643 |
agagtgtaac-aagtgagtttattaattagaagtttatct |
32213605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 144 - 253
Target Start/End: Original strand, 32213147 - 32213256
Alignment:
| Q |
144 |
tgtttactctaggataagagtaataataggatggagagtacatgagaggtttataattgtttgaagtattgttcactcaatttttagcatgtacattact |
243 |
Q |
| |
|
||||||| || | |||||||||||||||||| |||| |||||| | ||| ||||||||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
32213147 |
tgtttaccctggaataagagtaataataggaaggagggtacatcataggattataattgtttgaagtattgttcactcaatttttaggatgtacgttact |
32213246 |
T |
|
| Q |
244 |
ataaaatgtt |
253 |
Q |
| |
|
|||||||||| |
|
|
| T |
32213247 |
ataaaatgtt |
32213256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 93 - 331
Target Start/End: Original strand, 46453907 - 46454145
Alignment:
| Q |
93 |
taaatatggaataatctaaagatggaaagtgcaaagaataatgcaaaggaatgtttactctaggataagagtaataataggatggagagtacatgagagg |
192 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46453907 |
taaatatggaataatctaaagatagaaagagcaaagaataatgcaaaggaatgtttactctaggataagagtaataataggatggagagtacatgagagg |
46454006 |
T |
|
| Q |
193 |
tttataattgtttgaagtattgttcactcaatttttagcatgtacattactataaaatgtttaggagttttgtaatttagatatcacaacaaaacaaata |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
46454007 |
tttataattgtttgaagtattgttcactcaatttttagcatgtacattattataaaatgtttaggagttttgtaatttagatatcacaacaaaacaagta |
46454106 |
T |
|
| Q |
293 |
gagtgtaacaaagtgaatttattaattagaagttcatct |
331 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
46454107 |
gagtgtaacaaagtgaatttatttattagaagttcatct |
46454145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 93 - 331
Target Start/End: Original strand, 46461308 - 46461546
Alignment:
| Q |
93 |
taaatatggaataatctaaagatggaaagtgcaaagaataatgcaaaggaatgtttactctaggataagagtaataataggatggagagtacatgagagg |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46461308 |
taaatatggaataatctaaagatggaaagtgcaaagaataatgcaaaggaatgtttactctaggataagagtaataataggatggagagtacatgagagg |
46461407 |
T |
|
| Q |
193 |
tttataattgtttgaagtattgttcactcaatttttagcatgtacattactataaaatgtttaggagttttgtaatttagatatcacaacaaaacaaata |
292 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
|
|
| T |
46461408 |
tttataattgtttgaggtattgttcactcaatttttagcatgtaggttactataaaatgttaaggagttttgtaatttagatatcacaacaaaacaagta |
46461507 |
T |
|
| Q |
293 |
gagtgtaacaaagtgaatttattaattagaagttcatct |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46461508 |
gagtgtaacaaagtgaatttattaattagaagttcatct |
46461546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 300 - 331
Target Start/End: Complemental strand, 9361021 - 9360990
Alignment:
| Q |
300 |
acaaagtgaatttattaattagaagttcatct |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
9361021 |
acaaagtgaatttattaattagaagttcatct |
9360990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University