View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17516_low_21 (Length: 331)
Name: NF17516_low_21
Description: NF17516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17516_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 35253166 - 35253505
Alignment:
| Q |
1 |
tcagagtcatggtgcagtaataatagagtcatgatacacaacttatatatgatatgtgaagctcacctgaagttggtcaataacaaccatagtcggagta |
100 |
Q |
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|||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35253166 |
tcagagacacggtgcagtaataatagtatcatgatacacaacttatatatgatatgtgaagctcacctgaagttggtcaataacaaccatagtcggagta |
35253265 |
T |
|
| Q |
101 |
tcaattatggtaataacatttcgattagcaactgccaaaagcttccctgatccaggctgaaatctcactaggcttcctgtctgaaattcatttttataca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
35253266 |
tcaattatggtaataacatttcgattagcaactgccaaaagcttccctgatccaggctgaaatctcactaggcttcctgcctgaaattcatttttataca |
35253365 |
T |
|
| Q |
201 |
agtcattttactccgtgattctgttttgaatactataaaag----------------------atgagtttaagactaaccttaaattcgttaactatga |
278 |
Q |
| |
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||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| || |
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| T |
35253366 |
agtcattttactctgtgattctgttttgaatactttaaaagatgagttttgaatactgcaaaaatgagtttaagactaaccttaaattcgttaactaaga |
35253465 |
T |
|
| Q |
279 |
cattcttatggagatcccatactttaattacatcacaggt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
35253466 |
cattcttatggagatcccatactttaattacatcacaggt |
35253505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 113 - 207
Target Start/End: Original strand, 35241041 - 35241135
Alignment:
| Q |
113 |
ataacatttcgattagcaactgccaaaagcttccctgatccaggctgaaatctcactaggcttcctgtctgaaattcatttttatacaagtcatt |
207 |
Q |
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||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
35241041 |
ataacattttgattagctactgccaaaagcttccctgatccaggctgaaatctcactaggcttcctgcctgaaattcatttttatacaagtcatt |
35241135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 101 - 213
Target Start/End: Original strand, 35283327 - 35283439
Alignment:
| Q |
101 |
tcaattatggtaataacatttcgattagcaactgccaaaagcttccctgatccaggctgaaatctcactaggcttcctgtctgaaattcatttttataca |
200 |
Q |
| |
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|||| |||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | | |
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| T |
35283327 |
tcaagtatggtgataacattttgattagcgactgccaaaagcttccctgatccaggctgaaatctcactaggcttcctgcctgaaattcatttttacata |
35283426 |
T |
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| Q |
201 |
agtcattttactc |
213 |
Q |
| |
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||||||| ||||| |
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| T |
35283427 |
agtcattgtactc |
35283439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 35271034 - 35271242
Alignment:
| Q |
1 |
tcagagtcatggtgcagtaataatagagtcatgatacacaacttatatatgatatgtgaagctcacctgaagttggtcaataacaaccatagtcggagta |
100 |
Q |
| |
|
||||| |||||||| ||||||| | | ||||||||||||| |||||||||||||||||||||||||||||| || || | |||| || | | ||||| |
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| T |
35271034 |
tcagattcatggtgaagtaatactggtgtcatgatacacagcttatatatgatatgtgaagctcacctgaaatttgtggaaaacactcaaatcctgagta |
35271133 |
T |
|
| Q |
101 |
tcaattatggtaataacatttcgattagcaactgccaaaagcttccctgatccaggctgaaatctcactaggctt---cctgtctgaaattcatttttat |
197 |
Q |
| |
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| || |||||| ||||||||| |||||||||||||||||| | |||| ||||||||||||||||||||| | ||| ||| ||||||||||| ||||| |
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| T |
35271134 |
ttaaatatggttataacattttgattagcaactgccaaaaacgtcccagatccaggctgaaatctcacttgccttccaccttcctgaaattcatgtttat |
35271233 |
T |
|
| Q |
198 |
acaagtcat |
206 |
Q |
| |
|
||||||||| |
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|
| T |
35271234 |
acaagtcat |
35271242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 101 - 213
Target Start/End: Original strand, 35277813 - 35277928
Alignment:
| Q |
101 |
tcaattatggtaataacatttcgattagcaactgccaaaagcttccctgatccaggctgaaatctcactaggctt---cctgtctgaaattcatttttat |
197 |
Q |
| |
|
|||| |||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||| | ||| ||||||||||||||||| |
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| T |
35277813 |
tcaagtatggtaacaacattttgattagcaactgccaaaagcttcccagatccaggctgaaatctcactgggcatccaccttcctgaaattcatttttat |
35277912 |
T |
|
| Q |
198 |
acaagtcattttactc |
213 |
Q |
| |
|
|||||||||| ||||| |
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| T |
35277913 |
acaagtcattgtactc |
35277928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 106 - 212
Target Start/End: Original strand, 35246664 - 35246773
Alignment:
| Q |
106 |
tatggtaataacatttcgattagcaactgccaaaagcttccctgatccaggctgaaatctcactaggctt---cctgtctgaaattcatttttatacaag |
202 |
Q |
| |
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|||||| ||||||||| ||||||||||||||||| || |||| ||||||||||||||||||||||||||| |||| ||| |||||||||||||||||| |
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| T |
35246664 |
tatggtgataacattttgattagcaactgccaaatgcctcccagatccaggctgaaatctcactaggcttccacctgcctgcaattcatttttatacaag |
35246763 |
T |
|
| Q |
203 |
tcattttact |
212 |
Q |
| |
|
||||| |||| |
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|
| T |
35246764 |
tcattgtact |
35246773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 113 - 204
Target Start/End: Original strand, 35286869 - 35286963
Alignment:
| Q |
113 |
ataacatttcgattagcaactgccaaaagcttccctgatccaggctgaaatctcactaggctt---cctgtctgaaattcatttttatacaagtc |
204 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||| ||| ||||||||||||||||| ||| | |||| |||||||||||||||||| ||||| |
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| T |
35286869 |
ataacattttgattagcaactgccaaaagcatcccagatacaggctgaaatctcacttggcctacacctgcctgaaattcatttttatataagtc |
35286963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 35246570 - 35246630
Alignment:
| Q |
12 |
gtgcagtaataatagagtcatgatacacaacttatatatgatatgtgaagctcacctgaag |
72 |
Q |
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||||||||||| ||| | |||||| ||||||||||||| ||||| |||| ||||||||||| |
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| T |
35246570 |
gtgcagtaatactagtgccatgattcacaacttatatacgatatttgaaactcacctgaag |
35246630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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