View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17516_low_24 (Length: 305)
Name: NF17516_low_24
Description: NF17516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17516_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 149; Significance: 1e-78; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 2 - 194
Target Start/End: Complemental strand, 44301316 - 44301123
Alignment:
| Q |
2 |
attattgatctctgat-agttagtagttactcagnnnnnnnattttgttctgcatttaatacttgatcctatctatgctgtcaagataagtttaacattt |
100 |
Q |
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| T |
44301316 |
attattgatctctgattagttagtagttactcagtttttttattttgttctgcatttaatacttgatcctatctatgctgtcaagataagtttaacattt |
44301217 |
T |
|
| Q |
101 |
agtgcaaatgtcatgtaagatttgatcctccatactgatcaaaaaagcaaaacaggattaagaagataacttccagaggcaaaataacataatt |
194 |
Q |
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| T |
44301216 |
agtgcaaatgtcatgtaagatttgatcctccatactgatcaacaaagcaaaacaaggttaagaagataatttccagaggcaaaataacataatt |
44301123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 44312215 - 44312129
Alignment:
| Q |
2 |
attattgatctctgat-agttagtagttactcagnnnnnnnattttgttctgcatttaatacttgatcctatctatgctgtcaagat |
87 |
Q |
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|||||||||||||||| |||||||||||||||| || |||||||||||||| | |||||||||||| |||||||||||| |
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| T |
44312215 |
attattgatctctgattagttagtagttactcattttttttgttgtgttctgcatttaacagttgatcctatctctgctgtcaagat |
44312129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 128
Target Start/End: Complemental strand, 43895832 - 43895789
Alignment:
| Q |
86 |
ataagtttaacatttagtgcaaatgtcatg-taagatttgatcc |
128 |
Q |
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| T |
43895832 |
ataagtttaacatttagtgcaaatgtcatgttaagacttgatcc |
43895789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 128
Target Start/End: Complemental strand, 44306255 - 44306213
Alignment:
| Q |
87 |
taagtttaacatttagtgcaaatgtcatg-taagatttgatcc |
128 |
Q |
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| T |
44306255 |
taagtttaacatttagtgcaaatgtcatgttaagacttgatcc |
44306213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 116
Target Start/End: Complemental strand, 44312113 - 44312084
Alignment:
| Q |
87 |
taagtttaacatttagtgcaaatgtcatgt |
116 |
Q |
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| T |
44312113 |
taagtttaacatttagtgcaaatgtcatgt |
44312084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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