View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17516_low_3 (Length: 944)

Name: NF17516_low_3
Description: NF17516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17516_low_3
NF17516_low_3
[»] chr8 (5 HSPs)
chr8 (649-796)||(36645785-36645937)
chr8 (56-235)||(3733907-3734080)
chr8 (380-456)||(36645375-36645451)
chr8 (816-888)||(36646299-36646371)
chr8 (24-58)||(3733599-3733633)
[»] scaffold0576 (2 HSPs)
scaffold0576 (56-235)||(4358-4531)
scaffold0576 (24-58)||(4050-4084)
[»] chr7 (2 HSPs)
chr7 (56-235)||(2752015-2752188)
chr7 (24-58)||(2752462-2752496)
[»] chr6 (2 HSPs)
chr6 (56-235)||(15359374-15359547)
chr6 (24-58)||(15359066-15359100)
[»] chr1 (2 HSPs)
chr1 (56-235)||(20264622-20264796)
chr1 (24-58)||(20264314-20264348)
[»] chr2 (3 HSPs)
chr2 (56-235)||(28658454-28658628)
chr2 (236-286)||(29157949-29158000)
chr2 (24-58)||(28658146-28658180)
[»] scaffold0002 (1 HSPs)
scaffold0002 (120-232)||(288864-288978)
[»] chr4 (1 HSPs)
chr4 (120-232)||(18198819-18198933)


Alignment Details
Target: chr8 (Bit Score: 77; Significance: 3e-35; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 649 - 796
Target Start/End: Original strand, 36645785 - 36645937
Alignment:
Q  649 aaaccatttaagaaactatattccaacttaatactaca-----ccatctttgatccattaagttccacattggctagaatatggaacaagtgtgtgttta 743  Q
    |||||||||||||||| || ||||||||||| ||| ||     |||||||  ||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  36645785 aaaccatttaagaaaccatgttccaacttaacacttcaatgctccatcttgaatccattaagtcccacattggctagaatatggaacaagtatgtgttta 36645884  T
Q  744 taaaggtctggcatgctggtatgttctccgagctgggtaatactagcttgtga 796  Q
    ||||||||||||||||| |||||||  |||||||| |||| || |||||||||    
T  36645885 taaaggtctggcatgctagtatgtttgccgagctgcgtaacaccagcttgtga 36645937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 56 - 235
Target Start/End: Original strand, 3733907 - 3734080
Alignment:
Q  56 ttcaagcacttaaagatgaca---tatgtgaattttgttgcatcttgatgttaaaataactcaacttttctataattaactccttgaaataaccattgtc 152  Q
    |||||||||||||||||||||   ||||||| |||||||| || ||||||||||||||||| |  |||||||||||||||||||||||||| ||||||||    
T  3733907 ttcaagcacttaaagatgacaaaatatgtgagttttgttgtattttgatgttaaaataacttattttttctataattaactccttgaaatacccattgtc 3734006  T
Q  153 ttgtttttgataacttggatacgacactatttctgttgtaactgttgttgcagagatcttcaaagtaagtttcacactctctt 235  Q
    | ||||  ||       |||  |||| |||||| |||||||  |||||||||||||||||||||||||| |||| ||||||||    
T  3734007 tcgtttcaga-------gat--gacattatttcagttgtaatcgttgttgcagagatcttcaaagtaagcttcatactctctt 3734080  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 380 - 456
Target Start/End: Original strand, 36645375 - 36645451
Alignment:
Q  380 caaaaccagaacccaaggaagcagcagtagcaagttataatgttgcctgatgttactccaagctaaaccaggtatat 456  Q
    |||| ||||||||  | ||||||||||| ||||| ||||| ||||| || |||||||| ||||||||||||||||||    
T  36645375 caaagccagaacctgatgaagcagcagtcgcaagctataacgttgcttgttgttactctaagctaaaccaggtatat 36645451  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 816 - 888
Target Start/End: Original strand, 36646299 - 36646371
Alignment:
Q  816 tttgctaaataagctgcctaaagctgccgttgttttaactgataatcaaaactgatcatgtccttgctaactt 888  Q
    |||||||||||||||||||||  |||  ||||||||||| || ||||| |||||||| || ||||||||||||    
T  36646299 tttgctaaataagctgcctaacactggtgttgttttaacagagaatcagaactgatcctgaccttgctaactt 36646371  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 58
Target Start/End: Original strand, 3733599 - 3733633
Alignment:
Q  24 attggagaggttagaatgttattcttttctttttc 58  Q
    |||||||||||||||||||||||||||||||||||    
T  3733599 attggagaggttagaatgttattcttttctttttc 3733633  T

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Target: scaffold0576 (Bit Score: 68; Significance: 7e-30; HSPs: 2)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 56 - 235
Target Start/End: Original strand, 4358 - 4531
Alignment:
Q  56 ttcaagcacttaaagatgaca---tatgtgaattttgttgcatcttgatgttaaaataactcaacttttctataattaactccttgaaataaccattgtc 152  Q
    |||||||||||||||||||||   ||||||| |||||||| || ||||||||||||||||| |  |||||||||||||||||||||||||| ||||||||    
T  4358 ttcaagcacttaaagatgacaaaatatgtgagttttgttgtattttgatgttaaaataacttattttttctataattaactccttgaaatacccattgtc 4457  T
Q  153 ttgtttttgataacttggatacgacactatttctgttgtaactgttgttgcagagatcttcaaagtaagtttcacactctctt 235  Q
    | ||||  ||       |||  ||||||||||| |||||||  |||||||||||||||||||||||||| |||| ||| ||||    
T  4458 tcgtttcaga-------gat--gacactatttcagttgtaatcgttgttgcagagatcttcaaagtaagcttcatactgtctt 4531  T

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Target: scaffold0576; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 58
Target Start/End: Original strand, 4050 - 4084
Alignment:
Q  24 attggagaggttagaatgttattcttttctttttc 58  Q
    |||||||||||||||||||||||||||||||||||    
T  4050 attggagaggttagaatgttattcttttctttttc 4084  T

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Target: chr7 (Bit Score: 68; Significance: 7e-30; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 56 - 235
Target Start/End: Complemental strand, 2752188 - 2752015
Alignment:
Q  56 ttcaagcacttaaagatgaca---tatgtgaattttgttgcatcttgatgttaaaataactcaacttttctataattaactccttgaaataaccattgtc 152  Q
    |||||||||||||||||||||   ||||||| |||||||| || ||||||||||||||||| |  |||||||||||||||||||||||||| ||||||||    
T  2752188 ttcaagcacttaaagatgacaaaatatgtgagttttgttgtattttgatgttaaaataacttattttttctataattaactccttgaaatacccattgtc 2752089  T
Q  153 ttgtttttgataacttggatacgacactatttctgttgtaactgttgttgcagagatcttcaaagtaagtttcacactctctt 235  Q
    | ||||  ||       |||  |||| |||||| |||||||  |||||||||||||||||||||||||| |||| ||||||||    
T  2752088 tcgtttcaga-------gat--gacattatttcagttgtaatcgttgttgcagagatcttcaaagtaagcttcatactctctt 2752015  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 58
Target Start/End: Complemental strand, 2752496 - 2752462
Alignment:
Q  24 attggagaggttagaatgttattcttttctttttc 58  Q
    |||||||||||||||||||||||||||||||||||    
T  2752496 attggagaggttagaatgttattcttttctttttc 2752462  T

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Target: chr6 (Bit Score: 68; Significance: 7e-30; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 56 - 235
Target Start/End: Original strand, 15359374 - 15359547
Alignment:
Q  56 ttcaagcacttaaagatgaca---tatgtgaattttgttgcatcttgatgttaaaataactcaacttttctataattaactccttgaaataaccattgtc 152  Q
    |||||||||||||||||||||   ||||||| |||||||| || ||||||||||||||||| |  |||||||||||||||||||||||||| ||||||||    
T  15359374 ttcaagcacttaaagatgacaaaatatgtgagttttgttgtattttgatgttaaaataacttattttttctataattaactccttgaaatacccattgtc 15359473  T
Q  153 ttgtttttgataacttggatacgacactatttctgttgtaactgttgttgcagagatcttcaaagtaagtttcacactctctt 235  Q
    | ||||  ||       |||  |||| |||||| |||||||  |||||||||||||||||||||||||| |||| ||||||||    
T  15359474 tcgtttcaga-------gat--gacattatttcagttgtaatcgttgttgcagagatcttcaaagtaagcttcatactctctt 15359547  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 58
Target Start/End: Original strand, 15359066 - 15359100
Alignment:
Q  24 attggagaggttagaatgttattcttttctttttc 58  Q
    |||||||||||||||||||||||||||||||||||    
T  15359066 attggagaggttagaatgttattcttttctttttc 15359100  T

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Target: chr1 (Bit Score: 66; Significance: 1e-28; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 56 - 235
Target Start/End: Original strand, 20264622 - 20264796
Alignment:
Q  56 ttcaagcacttaaagatgaca---tatgtgaattttgttgcatcttgatgttaaaataactcaactttt-ctataattaactccttgaaataaccattgt 151  Q
    |||||||||||||||||||||   ||||||| |||||||| || |||||||||||||||||||  |||| |||||||||||||||||||||| |||||||    
T  20264622 ttcaagcacttaaagatgacaaaatatgtgagttttgttgtattttgatgttaaaataactcatttttttctataattaactccttgaaatacccattgt 20264721  T
Q  152 cttgtttttgataacttggatacgacactatttctgttgtaactgttgttgcagagatcttcaaagtaagtttcacactctctt 235  Q
    || |||         | ||| | ||||||||||| |||||||   ||||||||||||||||||||||||| |||| ||||||||    
T  20264722 ctcgtt---------tcggagatgacactatttcagttgtaatcattgttgcagagatcttcaaagtaagcttcatactctctt 20264796  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 58
Target Start/End: Original strand, 20264314 - 20264348
Alignment:
Q  24 attggagaggttagaatgttattcttttctttttc 58  Q
    |||||||||||||||||||||||||||||||||||    
T  20264314 attggagaggttagaatgttattcttttctttttc 20264348  T

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Target: chr2 (Bit Score: 61; Significance: 1e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 56 - 235
Target Start/End: Original strand, 28658454 - 28658628
Alignment:
Q  56 ttcaagcacttaaagatgaca---tatgtgaattttgttgcatcttgatgttaaaataactcaactttt-ctataattaactccttgaaataaccattgt 151  Q
    |||||||||||||||||||||   ||||||| |||||||| || |||||||||||||||||||  |||| ||||||||||||||||||||||  ||||||    
T  28658454 ttcaagcacttaaagatgacaaaatatgtgagttttgttgtattttgatgttaaaataactcatttttttctataattaactccttgaaatactcattgt 28658553  T
Q  152 cttgtttttgataacttggatacgacactatttctgttgtaactgttgttgcagagatcttcaaagtaagtttcacactctctt 235  Q
    || ||||  ||       |||  ||||||||||| |||||||   ||||||||||||||||||||||||| |||| ||||||||    
T  28658554 ctcgtttcaga-------gat--gacactatttcagttgtaatcattgttgcagagatcttcaaagtaagcttcatactctctt 28658628  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 236 - 286
Target Start/End: Original strand, 29157949 - 29158000
Alignment:
Q  236 caaagttttatgttgtaatccaagtcaaaa-ttgaactatcttgtacttatt 286  Q
    |||||||||||| |||||||||||| |||| |||||||||||||||||||||    
T  29157949 caaagttttatgctgtaatccaagtaaaaaattgaactatcttgtacttatt 29158000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 58
Target Start/End: Original strand, 28658146 - 28658180
Alignment:
Q  24 attggagaggttagaatgttattcttttctttttc 58  Q
    |||||||||||||||||||||||||||||||||||    
T  28658146 attggagaggttagaatgttattcttttctttttc 28658180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 232
Target Start/End: Complemental strand, 288978 - 288864
Alignment:
Q  120 ttctataattaactccttgaaataaccattgtcttgtttttgataacttggatacgacactatttctgttgtaactgttgttgcagagatcttc--aaag 217  Q
    |||||||||||| ||||||||||| |||||||||  |||  ||| ||||||| | |||||||||||||| |||| | | ||| || ||||||||  ||||    
T  288978 ttctataattaagtccttgaaatacccattgtctcatttcagatgacttggagatgacactatttctgtagtaattttagttacaaagatcttcaaaaag 288879  T
Q  218 taagtttcacactct 232  Q
    ||||||||| |||||    
T  288878 taagtttcatactct 288864  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 232
Target Start/End: Original strand, 18198819 - 18198933
Alignment:
Q  120 ttctataattaactccttgaaataaccattgtcttgtttttgataacttggatacgacactatttctgttgtaactgttgttgcagagatcttc--aaag 217  Q
    |||||||||||| ||||||||||| |||||||||  |||  ||| ||||||| | |||||||||||||| |||| | | ||| || ||||||||  ||||    
T  18198819 ttctataattaagtccttgaaatacccattgtctcatttcagatgacttggagatgacactatttctgtagtaattttagttacaaagatcttcaaaaag 18198918  T
Q  218 taagtttcacactct 232  Q
    ||||||||| |||||    
T  18198919 taagtttcatactct 18198933  T

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