View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17516_low_30 (Length: 279)
Name: NF17516_low_30
Description: NF17516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17516_low_30 |
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| [»] chr1 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 19 - 279
Target Start/End: Complemental strand, 31985762 - 31985505
Alignment:
| Q |
19 |
atatcaatgctttctattaatttcttcacattccttnnnnnnnnn--taatttcttaacatgagctttgttataccactatagctctagcaactactaag |
116 |
Q |
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| T |
31985762 |
atatcaatgctttctattaatttcttcacattccttaaaaaaaaaattaatttctacacatgagctttgttatacc--------tctaccaactactaag |
31985671 |
T |
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| Q |
117 |
caagcaccattataccagtggtattcgtgtcataaatttgggcttatttgagaggcccattataccactcactactaagcaccaacaggcaacaacaaac |
216 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
31985670 |
caagcaccattatacctgtggtattcgtgtcataaatttgggcttatttgagaggcccattataccaatcactactaagcaccaacaggcaacaacaaac |
31985571 |
T |
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| Q |
217 |
cctaataatggcaa---taacagcagccgcctgattcattcatttcttgtctcaatgctttagctt |
279 |
Q |
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||||||| | |||| |||||||||||||| |||||||||||||||| ||||||||||| ||||| |
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| T |
31985570 |
cctaatagtagcaatactaacagcagccgccagattcattcatttcttttctcaatgcttcagctt |
31985505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 19 - 279
Target Start/End: Original strand, 25510912 - 25511169
Alignment:
| Q |
19 |
atatcaatgctttctattaatttcttcacattccttnnnnnnnnn--taatttcttaacatgagctttgttataccactatagctctagcaactactaag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||| ||||||||||| |
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| T |
25510912 |
atatcaatgctttctattaatttcttcacattccttaaaaaaaaaattaatttctacacatgagctttgttatacc--------tctaccaactactaag |
25511003 |
T |
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| Q |
117 |
caagcaccattataccagtggtattcgtgtcataaatttgggcttatttgagaggcccattataccactcactactaagcaccaacaggcaacaacaaac |
216 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
25511004 |
caagcaccattatacctgtggtattcgtgtcataaatttgggcttatttgagaggcccattataccaatcactactaagcaccaacaggcaacaacaaac |
25511103 |
T |
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| Q |
217 |
cctaataatggcaa---taacagcagccgcctgattcattcatttcttgtctcaatgctttagctt |
279 |
Q |
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||||||| | |||| |||||||||||| | |||||||||||||||| ||||||||||| ||||| |
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| T |
25511104 |
cctaatagtagcaatactaacagcagccgtcagattcattcatttcttttctcaatgcttcagctt |
25511169 |
T |
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