View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17516_low_7 (Length: 459)

Name: NF17516_low_7
Description: NF17516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17516_low_7
NF17516_low_7
[»] chr8 (19 HSPs)
chr8 (8-443)||(6424553-6424988)
chr8 (8-443)||(6363662-6364110)
chr8 (8-281)||(6353026-6353314)
chr8 (112-288)||(7459917-7460093)
chr8 (353-435)||(6321904-6321986)
chr8 (353-443)||(6332470-6332560)
chr8 (371-443)||(6352857-6352929)
chr8 (375-443)||(6391471-6391539)
chr8 (353-443)||(6289514-6289604)
chr8 (374-443)||(7459646-7459715)
chr8 (112-264)||(7471519-7471671)
chr8 (380-443)||(6275027-6275090)
chr8 (8-87)||(6275392-6275471)
chr8 (8-87)||(6322259-6322338)
chr8 (115-263)||(6275201-6275349)
chr8 (333-430)||(6410646-6410745)
chr8 (8-87)||(6332843-6332922)
chr8 (380-429)||(6370575-6370624)
chr8 (178-282)||(6332633-6332737)
[»] chr5 (1 HSPs)
chr5 (374-423)||(9604084-9604133)
[»] chr3 (1 HSPs)
chr3 (374-430)||(36744661-36744717)
[»] chr2 (1 HSPs)
chr2 (374-430)||(42693651-42693707)


Alignment Details
Target: chr8 (Bit Score: 432; Significance: 0; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 8 - 443
Target Start/End: Complemental strand, 6424988 - 6424553
Alignment:
Q  8 gagatgaagcatttggacacacaaagtcttcagactttcttgctttcatactcaaatcagcatctcaaaatatcataccttccttgaaatctgtagttag 107  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6424988 gagatgaggcatttggacacacaaagtcttcagactttcttgctttcatactcaaatcagcatctcaaaatatcataccttccttgaaatctgtagttag 6424889  T
Q  108 caaagagtttaacaactttgaagacgtgcggtcactttacgatggtggaatcaagctacctaccaattttcttagcaacgttagcccaataccattgttc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6424888 caaagagtttaacaactttgaagacgtgcggtcactttacgatggtggaatcaagctacctaccaattttcttagcaacgttagcccaataccattgttc 6424789  T
Q  208 acggaactttttcgatctgatggtgcatcaacccttaagttttcaccacctaaagtggttcaaggtatatattagtcacaaactcctaatcttatcaaca 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6424788 acggaactttttcgatctgatggtgcatcaacccttaagttttcaccacctaaagtggttcaaggtatatattagtcacaaactcctaatcttatcaaca 6424689  T
Q  308 tatgcatatactagagaaatcaagttcatggatcttttgaaatttttattttgagtagtcgatcattctgcgtggatgactgatgaggaatttgcaaggg 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6424688 tatgcatatactagagaaatcaagttcatggatcttttgaaatttttattttgagtagtcgatcattctgcgtggatgactgatgaggaatttgcaaggg 6424589  T
Q  408 agatgattgctggagtgaatccacacatcatcaaaa 443  Q
    ||||||||||||||||||||||||||||||||||||    
T  6424588 agatgattgctggagtgaatccacacatcatcaaaa 6424553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 8 - 443
Target Start/End: Complemental strand, 6364110 - 6363662
Alignment:
Q  8 gagatgaagcatttggacacacaaagtcttcagactttcttgctttcatactcaaatcagcatctcaaaatatcataccttccttgaaatctgtagttag 107  Q
    |||||||| ||||||||||||||||||| ||||||||||||| |  |||||||||||| |||||||||||| ||||||||   || | |||| ||||||     
T  6364110 gagatgaatcatttggacacacaaagtcatcagactttcttgttcacatactcaaatctgcatctcaaaatgtcatacctcgattaagatctatagttac 6364011  T
Q  108 ----caaa-----------gagtttaacaactttgaagacgtgcggtcactttacgatggtggaatcaagctacctaccaattttcttagcaacgttagc 192  Q
        |||            |||||||||| ||||||||| ||||| || || || || |||||||||| ||| |||||  || | || ||  |  |||||    
T  6364010 attacaattccatgagcctgagtttaacacctttgaagatgtgcgctcgctctatgaaggtggaatcaggcttcctactgatatactaagtgaacttagc 6363911  T
Q  193 ccaataccattgttcacggaactttttcgatctgatggtgcatcaacccttaagttttcaccacctaaagtggttcaaggtatatatta----gtcacaa 288  Q
    |||||||||||||||| ||||||||| ||| ||||||||| | |  | ||||||||| ||||||| |||||| |||||||| |||||||    ||||||     
T  6363910 ccaataccattgttcaaggaacttttccgaactgatggtgaagcggcacttaagtttccaccaccaaaagtgattcaaggtttatattaattagtcacac 6363811  T
Q  289 actcctaatcttatcaacatatgcatatactagagaaatcaagttcatggatcttttgaaatttttattttgagtagtcgatcattctgcgtggatgact 388  Q
    | ||||| |  ||| |||||||      |  |||||||| ||||||||||||||||||||||||| |||||||  ||||||||||||||| |||||||||    
T  6363810 attcctattactattaacatat------atcagagaaataaagttcatggatcttttgaaattttaattttgaacagtcgatcattctgcatggatgact 6363717  T
Q  389 gatgaggaatttgcaagggagatgattgctggagtgaatccacacatcatcaaaa 443  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  6363716 gatgaggaatttgcaagggagatgattgctggggtgaatccacacatcataaaaa 6363662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 8 - 281
Target Start/End: Complemental strand, 6353314 - 6353026
Alignment:
Q  8 gagatgaagcatttggacacacaaagtcttcagactttcttgctttcatactcaaatcagcatctcaaaatatcataccttccttgaaatctgtagttag 107  Q
    |||||||| | ||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||| ||||||||    ||| |||||||||||     
T  6353314 gagatgaatcttttggacacacaaagtcatcagactttcttgtttacatactcaaatcagcatctcaaaatgtcatacctcaactgagatctgtagttac 6353215  T
Q  108 ---------caaa------gagtttaacaactttgaagacgtgcggtcactttacgatggtggaatcaagctacctaccaattttcttagcaacgttagc 192  Q
             |||       |||||||||| |||| |||| ||||| || || ||||| |||||||| ||||| |||||  || | || ||| |  ||||     
T  6353214 attacaactcaataaccctgagtttaacacctttcaagatgtgcgctctctctacgagggtggaattaagcttcctactgatgtactaagccagattagt 6353115  T
Q  193 ccaataccattgttcacggaactttttcgatctgatggtgcatcaacccttaagttttcaccacctaaagtggttcaaggtatatatta 281  Q
    |||||||||||||||| ||||||||| ||||||||||||| |  | | ||||||||| ||||||| |||||| ||||||||||||||||    
T  6353114 ccaataccattgttcaaggaacttttccgatctgatggtgaacaagcacttaagtttccaccaccaaaagtgattcaaggtatatatta 6353026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 112 - 288
Target Start/End: Complemental strand, 7460093 - 7459917
Alignment:
Q  112 gagtttaacaactttgaagacgtgcggtcactttacgatggtggaatcaagctacctaccaattttcttagcaacgttagcccaataccattgttcacgg 211  Q
    |||||||||| |||||||||  | || || || |||||||||||||| ||||| |||||  || | || ||| |  |||||||||||||||||||||  |    
T  7460093 gagtttaacacctttgaagatatacgctctctctacgatggtggaattaagcttcctactgatgtactaagccagattagcccaataccattgttcaaag 7459994  T
Q  212 aactttttcgatctgatggtgcatcaacccttaagttttcaccacctaaagtggttcaaggtatatattagtcacaa 288  Q
    ||||||||||| ||||||||| | |    ||||||||| ||||||| ||||||||||||||||||||||||| ||||    
T  7459993 aactttttcgaactgatggtgaagctgtacttaagtttccaccaccgaaagtggttcaaggtatatattagttacaa 7459917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 353 - 435
Target Start/End: Complemental strand, 6321986 - 6321904
Alignment:
Q  353 ttattttgagtagtcgatcattctgcgtggatgactgatgaggaatttgcaagggagatgattgctggagtgaatccacacat 435  Q
    |||||||||| |||  |||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  6321986 ttattttgagcagttaatcagtctgcgtggatgactgatgaagaatttgcaagggagatgattgctggtgtgaatccacacat 6321904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 353 - 443
Target Start/End: Complemental strand, 6332560 - 6332470
Alignment:
Q  353 ttattttgagtagtcgatcattctgcgtggatgactgatgaggaatttgcaagggagatgattgctggagtgaatccacacatcatcaaaa 443  Q
    |||||||||| |||  |||| ||||| |||||||||||||  |||||||||||||||||||||||||| |||||||||||||| |||||||    
T  6332560 ttattttgagcagttaatcagtctgcatggatgactgatggagaatttgcaagggagatgattgctggtgtgaatccacacataatcaaaa 6332470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 371 - 443
Target Start/End: Complemental strand, 6352929 - 6352857
Alignment:
Q  371 cattctgcgtggatgactgatgaggaatttgcaagggagatgattgctggagtgaatccacacatcatcaaaa 443  Q
    |||||||| |||  |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  6352929 cattctgcatggcagactgatgaggaatttgcaagggagatgattgctggggtgaacccacacatcatcaaaa 6352857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 375 - 443
Target Start/End: Complemental strand, 6391539 - 6391471
Alignment:
Q  375 ctgcgtggatgactgatgaggaatttgcaagggagatgattgctggagtgaatccacacatcatcaaaa 443  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||    
T  6391539 ctgcatggatgactgatgaggaatttgcaagggagatgattgctggtgtgaatccaaacgtcatcaaaa 6391471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 353 - 443
Target Start/End: Complemental strand, 6289604 - 6289514
Alignment:
Q  353 ttattttgagtagtcgatcattctgcgtggatgactgatgaggaatttgcaagggagatgattgctggagtgaatccacacatcatcaaaa 443  Q
    |||||||||| |||  |||| ||||  |||||||||||||| |||||| |||| |||||||||||||| |||||||||||||| |||||||    
T  6289604 ttattttgagcagttaatcagtctggatggatgactgatgaagaatttacaagagagatgattgctggtgtgaatccacacattatcaaaa 6289514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 374 - 443
Target Start/End: Complemental strand, 7459715 - 7459646
Alignment:
Q  374 tctgcgtggatgactgatgaggaatttgcaagggagatgattgctggagtgaatccacacatcatcaaaa 443  Q
    ||||| |||||||||||||||||||| |||||| ||||||||||||| |||||||| || ||||||||||    
T  7459715 tctgcatggatgactgatgaggaattcgcaaggcagatgattgctggggtgaatcctcatatcatcaaaa 7459646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 112 - 264
Target Start/End: Complemental strand, 7471671 - 7471519
Alignment:
Q  112 gagtttaacaactttgaagacgtgcggtcactttacgatggtggaatcaagctacctaccaattttcttagcaacgttagcccaataccattgttcacgg 211  Q
    |||||||||| |||||||||    || || || |||||||||||||| ||||| |||||  || | || |||||  |||||||||||||||||||||  |    
T  7471671 gagtttaacacctttgaagatacacgatctctctacgatggtggaattaagcttcctactgatgtactaagcaagattagcccaataccattgttcaaag 7471572  T
Q  212 aactttttcgatctgatggtgcatcaacccttaagttttcaccacctaaagtg 264  Q
    ||| ||||||| ||||||||| | ||   ||||||||| ||||||||||||||    
T  7471571 aacattttcgaactgatggtgaagcagtacttaagtttccaccacctaaagtg 7471519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 380 - 443
Target Start/End: Complemental strand, 6275090 - 6275027
Alignment:
Q  380 tggatgactgatgaggaatttgcaagggagatgattgctggagtgaatccacacatcatcaaaa 443  Q
    ||||||||||| || |||||| |||| |||||||||||||| || |||||||||||||||||||    
T  6275090 tggatgactgacgaagaatttacaagagagatgattgctggtgtaaatccacacatcatcaaaa 6275027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 6275471 - 6275392
Alignment:
Q  8 gagatgaagcatttggacacacaaagtcttcagactttcttgctttcatactcaaatcagcatctcaaaatatcatacct 87  Q
    |||||||| ||||||| |||   ||||||||||| ||||||| || |||||||||||||| |||||||||| ||||||||    
T  6275471 gagatgaatcatttggtcacttgaagtcttcagattttcttgtttacatactcaaatcagtatctcaaaatgtcatacct 6275392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 6322338 - 6322259
Alignment:
Q  8 gagatgaagcatttggacacacaaagtcttcagactttcttgctttcatactcaaatcagcatctcaaaatatcatacct 87  Q
    |||||||||||||||| |||   ||||||||||| ||||||| || ||||||||||||||| ||||||| | ||||||||    
T  6322338 gagatgaagcatttggtcacttgaagtcttcagattttcttgtttacatactcaaatcagcttctcaaagtttcatacct 6322259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 115 - 263
Target Start/End: Complemental strand, 6275349 - 6275201
Alignment:
Q  115 tttaacaactttgaagacgtgcggtcactttacgatggtggaatcaagctacctaccaattttcttagcaacgttagcccaataccattgttcacggaac 214  Q
    ||||||| |||||| || ||||| ||| |||| |||||||| || ||  ||||||| | |   ||||||||  ||||||| |||||||| |||| |||||    
T  6275349 tttaacagctttgatgatgtgcgatcattttatgatggtgggattaaattacctactagtacacttagcaaacttagccctataccatttttcaaggaac 6275250  T
Q  215 tttttcgatctgatggtgcatcaacccttaagttttcaccacctaaagt 263  Q
    | || ||| ||||||||| |||  |||| |||||| |||||||||||||    
T  6275249 tcttccgaactgatggtgaatcggccctaaagtttccaccacctaaagt 6275201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 430
Target Start/End: Complemental strand, 6410745 - 6410646
Alignment:
Q  333 tcatggatcttttgaaatttt--tattttgagtagtcgatcattctgcgtggatgactgatgaggaatttgcaagggagatgattgctggagtgaatcca 430  Q
    ||||||||||||||||| |||  || | |||||||  ||||   |||| |||||||||||||||||||| ||||| ||||| |||||||| |||||||||    
T  6410745 tcatggatcttttgaaaatttcttactatgagtagaggatcgcactgcatggatgactgatgaggaattcgcaagagagataattgctggtgtgaatcca 6410646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 6332922 - 6332843
Alignment:
Q  8 gagatgaagcatttggacacacaaagtcttcagactttcttgctttcatactcaaatcagcatctcaaaatatcatacct 87  Q
    |||||||| ||||||| |||   ||||||||||||||||||| ||  ||||| |||||||||||||||||| | ||||||    
T  6332922 gagatgaatcatttggccacttgaagtcttcagactttcttgtttatatactgaaatcagcatctcaaaatgttatacct 6332843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 380 - 429
Target Start/End: Complemental strand, 6370624 - 6370575
Alignment:
Q  380 tggatgactgatgaggaatttgcaagggagatgattgctggagtgaatcc 429  Q
    |||||| |||||||||||||||||||  ||||||||||||| ||||||||    
T  6370624 tggatggctgatgaggaatttgcaagacagatgattgctggtgtgaatcc 6370575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 282
Target Start/End: Complemental strand, 6332737 - 6332633
Alignment:
Q  178 cttagcaacgttagcccaataccattgttcacggaactttttcgatctgatggtgcatcaacccttaagttttcaccacctaaagtggttcaaggtatat 277  Q
    ||||||||  ||||||| |||||| |||||  ||||||  |  || ||||||||| |||  |||| |||||| ||| ||||||||||||| ||||||| |    
T  6332737 cttagcaaaattagccccataccagtgttccaggaactcctcagaactgatggtgaatcggccctaaagtttccacgacctaaagtggttgaaggtatct 6332638  T
Q  278 attag 282  Q
    |||||    
T  6332637 attag 6332633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 423
Target Start/End: Original strand, 9604084 - 9604133
Alignment:
Q  374 tctgcgtggatgactgatgaggaatttgcaagggagatgattgctggagt 423  Q
    ||||| |||||||||||||| ||||||| ||| |||||| ||||||||||    
T  9604084 tctgcatggatgactgatgaagaatttggaagagagatggttgctggagt 9604133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 430
Target Start/End: Original strand, 36744661 - 36744717
Alignment:
Q  374 tctgcgtggatgactgatgaggaatttgcaagggagatgattgctggagtgaatcca 430  Q
    ||||| |||||||||||||| ||||||||||| || ||| ||||||| || ||||||    
T  36744661 tctgcatggatgactgatgaagaatttgcaagagaaatgcttgctggtgtaaatcca 36744717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 430
Target Start/End: Complemental strand, 42693707 - 42693651
Alignment:
Q  374 tctgcgtggatgactgatgaggaatttgcaagggagatgattgctggagtgaatcca 430  Q
    ||||| |||||||||||||| ||||||||||| || ||| | |||||||| ||||||    
T  42693707 tctgcatggatgactgatgaagaatttgcaagagaaatgctagctggagtaaatcca 42693651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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