View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17516_low_9 (Length: 452)
Name: NF17516_low_9
Description: NF17516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17516_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 40735993 - 40736217
Alignment:
| Q |
19 |
ccaatgtcctgtggaacgctcctacatcaagtatctgaaatttgcagcgatgagatgatatgagcgaatcattctcgatgatgaaggaagcctcacgcca |
118 |
Q |
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| T |
40735993 |
ccaatgtcctgtggaacactcctacatcaagtatctgaaatttgcagcgatgagatgat--gagcgaatcattctcaatgatgaaggaagcctcacgcca |
40736090 |
T |
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| Q |
119 |
ttggagagattcattctggagtaagcgttgattaacataaccttgaattcaattcaatttgataaccctaatctctgaacaacaaagacacgggtttgct |
218 |
Q |
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| T |
40736091 |
ttggagagattcattctggagtaagcgttgattaacataaccttgaattgaattcaatttgataaccctaatctctgaacaacaaagacacgggtttgcc |
40736190 |
T |
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| Q |
219 |
ttgttaaaagattttttagtaaacaaa |
245 |
Q |
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| T |
40736191 |
ttgttaaaagattttttagtaaacaaa |
40736217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 306 - 439
Target Start/End: Original strand, 40736277 - 40736410
Alignment:
| Q |
306 |
aaaccaactatctttcgcgcgcaacttgaggagactaatccatcgaactttctaaggcctaaatgggcgacaaactctctttatttttgtcaatccttcc |
405 |
Q |
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| T |
40736277 |
aaaccaactatctttcgcgcgcaacttgcggagactaatccatcgaactttctaaggcgtaaatgggcgacaaactctctttatttttgtcaatccttcc |
40736376 |
T |
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| Q |
406 |
tcaaatatcctctttgttttcctccatcttatat |
439 |
Q |
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| T |
40736377 |
tcaaatatcctctttgttttcctccatcttatat |
40736410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 87 - 156
Target Start/End: Original strand, 33004085 - 33004154
Alignment:
| Q |
87 |
tcattctcgatgatgaaggaagcctcacgccattggagagattcattctggagtaagcgttgattaacat |
156 |
Q |
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| T |
33004085 |
tcattctggaagatgaaggaagcctcaagccattggagagattcattctggaggaagcattgattaacat |
33004154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 87 - 173
Target Start/End: Complemental strand, 37469674 - 37469588
Alignment:
| Q |
87 |
tcattctcgatgatgaaggaagcctcacgccattggagagattcattctggagtaagcgttgattaacataaccttgaattcaattc |
173 |
Q |
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| T |
37469674 |
tcattctggaggatgaaggaagcctcatactgtaggcgagattcattctggaggaagcgttgattaacataaccttgaatttaattc |
37469588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 95 - 139
Target Start/End: Complemental strand, 37469708 - 37469664
Alignment:
| Q |
95 |
gatgatgaaggaagcctcacgccattggagagattcattctggag |
139 |
Q |
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| T |
37469708 |
gatgatgagcgaagcctcgcgccattggagagattcattctggag |
37469664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 37469820 - 37469779
Alignment:
| Q |
19 |
ccaatgtcctgtggaacgctcctacatcaagtatctgaaatt |
60 |
Q |
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| T |
37469820 |
ccaatgtcctgtggaaaactcctacatcatgtatctgaaatt |
37469779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 98 - 156
Target Start/End: Original strand, 17594991 - 17595049
Alignment:
| Q |
98 |
gatgaaggaagcctcacgccattggagagattcattctggagtaagcgttgattaacat |
156 |
Q |
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| T |
17594991 |
gatgaaggaagcgtcacgccatacgagagattcatcttggaggaagcgttgattaacat |
17595049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 139
Target Start/End: Original strand, 17594946 - 17594990
Alignment:
| Q |
95 |
gatgatgaaggaagcctcacgccattggagagattcattctggag |
139 |
Q |
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| T |
17594946 |
gatgatgagcgaagcctcacgccattggagagactcatactggag |
17594990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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