View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17517_high_2 (Length: 535)
Name: NF17517_high_2
Description: NF17517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17517_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 488; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 1 - 520
Target Start/End: Complemental strand, 43709516 - 43708998
Alignment:
| Q |
1 |
gaacttgagatatttggatttgatctggcttggctagagcctcatgttcaatttgctttaagaatgaaaagttacgtggagaaagctgtgcagatggaga |
100 |
Q |
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| T |
43709516 |
gaacttgagatatttggatttgatctggcttggctagagcctcatgttcaatttgctttaagaatgaaaagttacgtggagaaagatgtgcagatggaga |
43709417 |
T |
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| Q |
101 |
tgctaaaggagaatgcggaagatatagcgttggaaatggagaggcttaagacaaaattggctactcttgaggtagatcttaacatagcaagagacttgtt |
200 |
Q |
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| T |
43709416 |
tgctgaaggagaatgcggaaggtatagcgttggaaatggagaggcttaagacaaaattggctactcttgaggtagatcttaacatagcaagagacttgtt |
43709317 |
T |
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| Q |
201 |
gatggaagaaggcttcaatgggatagatttgaatgttgaactaggatatgggataccatagacctctttctctacattaacatgcatgtttatatggatg |
300 |
Q |
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| T |
43709316 |
gatggaagaaggcttcaatgggatagatttgaatgttgaactaggatatgggataccatagacctctttctctacattaatatgcatgtttatatggatg |
43709217 |
T |
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| Q |
301 |
gatttttaatgtcttgaataaattgtgactgcttgtctatctctctaataatacaatgttattgcagattcatctgttgacaaccgtaagtctttttatt |
400 |
Q |
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| T |
43709216 |
gatttttaatgtcttgaataaattgtgactgcttgtctatctctctaataatacaatgttattgcagattcatctgttgacaactg-aagtctttttatt |
43709118 |
T |
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| Q |
401 |
atatatattcaactattgttcattgttcaatgcgtattgttgttgatccatctcagcgtccacaagatgaaactgtacattgcagtctagatccaaagat |
500 |
Q |
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| T |
43709117 |
atatatattcaactattgttcattgttcaatgcgtattgttgttgatccatctcagcgtccacaagatgaaaccgtacattgcagtctagatccaaagat |
43709018 |
T |
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| Q |
501 |
ggcttaaataaggccatttt |
520 |
Q |
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| T |
43709017 |
ggcttaaataaggccatttt |
43708998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 43707792 - 43707701
Alignment:
| Q |
1 |
gaacttgagatatttggatttgatctggcttggctagagcctcatgttcaatttgctttaagaatgaaaagttacgtggagaaagctgtgca |
92 |
Q |
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|||||||||| |||| |||||||||| |||||||||||| |||||| ||| ||||||| |||||||||||| |||||||||| |||||| |
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| T |
43707792 |
gaacttgagaaatttagatttgatctcacttggctagagctccatgttaaatgtgctttaggaatgaaaagttttgtggagaaagttgtgca |
43707701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 43695623 - 43695538
Alignment:
| Q |
1 |
gaacttgagatatttggatttgatctggcttggctagagcctcatgttcaatttgctttaagaatgaaaagttacgtggagaaagc |
86 |
Q |
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| T |
43695623 |
gaacttgagaagtttaaatttgatatggcttggcttgatccccatgttcaatctgctttaggaattaaaagctatgtggagaaagc |
43695538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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