View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17517_high_3 (Length: 384)
Name: NF17517_high_3
Description: NF17517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17517_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 10 - 365
Target Start/End: Complemental strand, 53312048 - 53311697
Alignment:
| Q |
10 |
attattctcatcattgaccatatataaaactgaaagtgatttggagacaaaatatttttgcaaattgatcggctattatggaacgagtgggataaaactt |
109 |
Q |
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| T |
53312048 |
attactctcatcattgaccatatataaaactgaaagtgatttggagacaaaatatttttgcaaattgatcggctattatggaacgagtgggataaaactt |
53311949 |
T |
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| Q |
110 |
aacagacaccatagatggtatactttagagtacgtgatacatagaatactgtagggtggtggaggacttctgtagtgaaatgcaaaatgtcaaatcctaa |
209 |
Q |
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| T |
53311948 |
aacagacatcatagatggtatactttagagtacgtgatacagagaatactgtagggtggtggaggactcctgtagtgaaatgcaaaacgtcaaatcctaa |
53311849 |
T |
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| Q |
210 |
atca-tcttgtgtgcactgaaactagcatgggagcatatctatgaaagttcagtgcatgtttatactttaatgacatgcatattggaccattaacacaag |
308 |
Q |
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|||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53311848 |
atcattcttgtgtgcactgaaactagcatgggagcacatctatgaaagttcagtgcatgtttatactttaatgacatgcatattggaccattaacacaag |
53311749 |
T |
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| Q |
309 |
ctaacaaaaatccatttaattagtagagggggcaacaacacaatgggcttaatcagc |
365 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
53311748 |
ctaacaaaaatcc-----attagtagagggggcaacaacacaatgggcttaatcagc |
53311697 |
T |
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