View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17517_low_1 (Length: 693)
Name: NF17517_low_1
Description: NF17517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17517_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 559; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 19 - 678
Target Start/End: Original strand, 40470915 - 40471579
Alignment:
| Q |
19 |
actatagcataactggaatgaaaccaaccaacgaactggctggttcacagttgaagctgtctttttgatccagtttttaataaaacattgcaaataatat |
118 |
Q |
| |
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||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
40470915 |
actatagtataaccggaatgaaaccaaccaacgaactggctggttcacagttgaagctgtctttttgatccagtttttaa---aacattgcaaattatat |
40471011 |
T |
|
| Q |
119 |
gaagttatatattgcaaactcatgaagctattatgtataaacttcaggctatagatttagtnnnnnnnnnnnnnn--------tcaccttcttttacttc |
210 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
40471012 |
gaagttatatattgcaaactcatgaagctattatgtataaacttcaggctatagatttagtaaaaaaaaaagaaagaaaaaaatcaccttcttttacttc |
40471111 |
T |
|
| Q |
211 |
tagagtcatcttcctctgcctcaaatcctttgcttccttcctcacattccccgcttagaccacaagaagtttctagagcagaatcattaggctgtgaagc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
40471112 |
tagagtcatcttcctctgcctcaaatcctttgcttccttcctcacattccccacttagaccacaagaagtttctagagcagaatcatcaggcagtgaagc |
40471211 |
T |
|
| Q |
311 |
tttgacttgattctctattcttccttcattcctttcattctgattactattattactccatactttatcttgaaccattccatcagaaatcattcctgat |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40471212 |
tttgacttgattctctattcttccttcattcctttcattctgattactattattactccatactttatcttgaaccattccatcagaaatcattcctgat |
40471311 |
T |
|
| Q |
411 |
gttgctcccgagtttcgcttttgatgttgtggctttccatggttgtgttcacctttataaacaatttctgcaatctcaccatctaatgatctttcaactt |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40471312 |
gttgctcccgagtttcgcttttgatgttgtggctttccatggttgtgttcacctttataaacaatttctgcaatctcaccatctaatgatctttcaactt |
40471411 |
T |
|
| Q |
511 |
tctttttaactggacaattaggatatgtgcacttgtaataacttcgaggatactcgcttccttttacttgcttctgtccatattttctccagttatatcc |
610 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40471412 |
tctttttaactggacaattaggatatgtgcacttgtaataacttcgaggatactcgcttccttttacttgcttctgtccatattttctccagttatatcc |
40471511 |
T |
|
| Q |
611 |
atcatacgaaggtctatcagcattatttgtggatggtaatgctttttggtcctcctcaatgttctgtg |
678 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40471512 |
atcatacgaaggtctatcagcattatttgtggatggtaatgctttttggtcctcctcaatgttctgtg |
40471579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 537 - 601
Target Start/End: Original strand, 26332543 - 26332607
Alignment:
| Q |
537 |
gtgcacttgtaataacttcgaggatactcgcttccttttacttgcttctgtccatattttctcca |
601 |
Q |
| |
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||||||||||||||||| || |||| ||||||||||| ||||| |||||||||||||||||||| |
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| T |
26332543 |
gtgcacttgtaataactacgcggattttcgcttcctttcacttgtttctgtccatattttctcca |
26332607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 240; Significance: 1e-132; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 364 - 678
Target Start/End: Complemental strand, 16863893 - 16863593
Alignment:
| Q |
364 |
tactccatactttatcttgaaccattccatcagaaatcattcctgatgttgctcccgagtttcgcttttgatgttgtggctttccatggttgtgttcacc |
463 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16863893 |
tactccatactttatcttgaaccattccatcagaagtcattcctgatgttgctcccgagtttcgcttttgatgttgtggctttccatggttgtgttcacc |
16863794 |
T |
|
| Q |
464 |
tttataaacaatttctgcaatctcaccatctaatgatctttcaactttctttttaactggacaattaggatatgtgcacttgtaataacttcgaggatac |
563 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
16863793 |
tttataaacaatttctgcaatctcaccatctaatgatctttcaactttctttttaactggataattaggatatgtgcacttgtaataacttcgaagatac |
16863694 |
T |
|
| Q |
564 |
tcgcttccttttacttgcttctgtccatattttctccagttatatccatcatacgaaggtctatcagcattatttgtggatggtaatgctttttggtcct |
663 |
Q |
| |
|
||| ||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
16863693 |
tcg--------------cttctttccatattttctctagttatatccatcatacgaaggtctatcaacattatttgtggatggtaatgctttttggtcct |
16863608 |
T |
|
| Q |
664 |
cctcaatgttctgtg |
678 |
Q |
| |
|
|||||||| |||||| |
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| T |
16863607 |
cctcaatgctctgtg |
16863593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 507 - 613
Target Start/End: Complemental strand, 2056406 - 2056300
Alignment:
| Q |
507 |
actttctttttaactggacaattaggatatgtgcacttgtaataacttcgaggatactcgcttccttttacttgcttctgtccatattttctccagttat |
606 |
Q |
| |
|
||||||||||||||||||||||| | || || |||||||| ||||||||||| |||||||| || || |||||||| || |||||||||||||| |||| |
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| T |
2056406 |
actttctttttaactggacaatttgaatgagtacacttgtagtaacttcgagggtactcgctacccttaacttgcttttggccatattttctccaattat |
2056307 |
T |
|
| Q |
607 |
atccatc |
613 |
Q |
| |
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||||||| |
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| T |
2056306 |
atccatc |
2056300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 521 - 615
Target Start/End: Original strand, 26967036 - 26967130
Alignment:
| Q |
521 |
tggacaattaggatatgtgcacttgtaataacttcgaggatactcgcttccttttacttgcttctgtccatattttctccagttatatccatcat |
615 |
Q |
| |
|
|||||||||||| || ||||| || |||||||||| |||| || |||||||| ||||| || ||||||||||||||||| || |||||||||| |
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| T |
26967036 |
tggacaattagggtaagtgcatttataataacttcttggattttcacttcctttcacttgtttttgtccatattttctccaattgtatccatcat |
26967130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 7e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 522 - 615
Target Start/End: Original strand, 18876301 - 18876394
Alignment:
| Q |
522 |
ggacaattaggatatgtgcacttgtaataacttcgaggatactcgcttccttttacttgcttctgtccatattttctccagttatatccatcat |
615 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||| ||||||| ||||| || || |||||||| ||||| |||||||| || ||||||| |
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|
| T |
18876301 |
ggacagttaggatgcgtgcacttgtaataacttcgaggaaactcgctacctttcacctgtttctgtccgtatttcctccagttgtagccatcat |
18876394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 497 - 615
Target Start/End: Original strand, 31615312 - 31615430
Alignment:
| Q |
497 |
tgatctttcaactttctttttaactggacaattaggatatgtgcacttgtaataacttcgaggatactcgcttccttttacttgcttctgtccatatttt |
596 |
Q |
| |
|
|||||| ||||||||||| || ||||| ||||| |||||||| ||||| ||||||| |||| || ||||| || |||||||| |||||||||||| |
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| T |
31615312 |
tgatctctcaactttcttctttgtaggacagttagggtatgtgcatttgtagtaacttctcggattttcacttcccttaacttgcttttgtccatatttt |
31615411 |
T |
|
| Q |
597 |
ctccagttatatccatcat |
615 |
Q |
| |
|
| ||| || |||||||||| |
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|
| T |
31615412 |
cgccaattgtatccatcat |
31615430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 537 - 613
Target Start/End: Complemental strand, 3669270 - 3669194
Alignment:
| Q |
537 |
gtgcacttgtaataacttcgaggatactcgcttccttttacttgcttctgtccatattttctccagttatatccatc |
613 |
Q |
| |
|
||||||||||||||||||| |||| || |||||||| ||||| |||| ||||||||||||||| || |||||||| |
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|
| T |
3669270 |
gtgcacttgtaataacttcttggattttcacttcctttcacttgtttctctccatattttctccacttgtatccatc |
3669194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 543 - 604
Target Start/End: Original strand, 32110260 - 32110321
Alignment:
| Q |
543 |
ttgtaataacttcgaggatactcgcttccttttacttgcttctgtccatattttctccagtt |
604 |
Q |
| |
|
|||||||||||||||||| |||||| ||||| ||||| || |||||||| || |||||||| |
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|
| T |
32110260 |
ttgtaataacttcgaggaaactcgcaacctttcacttgtttttgtccatacttcctccagtt |
32110321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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