View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17517_low_6 (Length: 258)

Name: NF17517_low_6
Description: NF17517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17517_low_6
NF17517_low_6
[»] chr6 (1 HSPs)
chr6 (8-238)||(7561947-7562180)
[»] chr3 (4 HSPs)
chr3 (183-240)||(47536495-47536552)
chr3 (182-240)||(9598431-9598485)
chr3 (208-240)||(3582796-3582828)
chr3 (208-240)||(7738683-7738715)
[»] chr4 (1 HSPs)
chr4 (185-240)||(47806271-47806326)
[»] chr1 (2 HSPs)
chr1 (183-240)||(21341175-21341230)
chr1 (208-240)||(41763170-41763202)
[»] chr7 (3 HSPs)
chr7 (183-240)||(47155119-47155175)
chr7 (183-240)||(44406871-44406924)
chr7 (208-240)||(44454526-44454558)
[»] scaffold1160 (1 HSPs)
scaffold1160 (208-240)||(1727-1759)
[»] chr8 (1 HSPs)
chr8 (208-240)||(26799198-26799230)
[»] chr5 (1 HSPs)
chr5 (183-240)||(35270696-35270749)
[»] chr2 (2 HSPs)
chr2 (208-240)||(9842217-9842249)
chr2 (208-240)||(37413194-37413226)


Alignment Details
Target: chr6 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 8 - 238
Target Start/End: Complemental strand, 7562180 - 7561947
Alignment:
Q  8 gtcgattatatgagtcaacttacgccataatattttattataaatcataaaagaatgtgttag---cgggaaaatttcctaccaattttttataatttca 104  Q
    |||| |||||||||| ||||||||||||||||||||||||||||| || ||||||||| |||    ||| ||||||||||||| ||||||||||||||||    
T  7562180 gtcggttatatgagttaacttacgccataatattttattataaattattaaagaatgttttattaacggcaaaatttcctacctattttttataatttca 7562081  T
Q  105 tttcataataatacaataatttggtgccctaatttcatcacgagacacactttttctcctcgctaaatcattattacttgtccttgtgagcttagttcag 204  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||    
T  7562080 tttcataataatacaataatttggtgacctaatttcatcacgagacacacttttcctcctcgctaaatcattattatttgttcttgtgagcttagttcag 7561981  T
Q  205 ttggttggtagggagaatgcataaaatatgcaag 238  Q
    ||| ||||||| |  |||||||||||||||||||    
T  7561980 ttgattggtagaggcaatgcataaaatatgcaag 7561947  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 183 - 240
Target Start/End: Complemental strand, 47536552 - 47536495
Alignment:
Q  183 tgtccttgtgagcttagttcagttggttggtagggagaatgcataaaatatgcaaggt 240  Q
    |||||| |||||||||| | |||| ||||||||||| |||||||||||||||||||||    
T  47536552 tgtcctcgtgagcttagcttagttagttggtagggacaatgcataaaatatgcaaggt 47536495  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 240
Target Start/End: Original strand, 9598431 - 9598485
Alignment:
Q  182 ttgtccttgtgagcttagttcagttggttggtagggagaatgcataaaatatgcaaggt 240  Q
    ||||||| |||||||||||||||||||||    |||| |||| ||||||||||||||||    
T  9598431 ttgtcctcgtgagcttagttcagttggtt----gggacaatgtataaaatatgcaaggt 9598485  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 240
Target Start/End: Original strand, 3582796 - 3582828
Alignment:
Q  208 gttggtagggagaatgcataaaatatgcaaggt 240  Q
    |||||| ||||||||||||||||||||||||||    
T  3582796 gttggttgggagaatgcataaaatatgcaaggt 3582828  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 240
Target Start/End: Original strand, 7738683 - 7738715
Alignment:
Q  208 gttggtagggagaatgcataaaatatgcaaggt 240  Q
    ||||||||||| |||||||||||||||||||||    
T  7738683 gttggtagggacaatgcataaaatatgcaaggt 7738715  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 240
Target Start/End: Complemental strand, 47806326 - 47806271
Alignment:
Q  185 tccttgtgagcttagttcagttggttggtagggagaatgcataaaatatgcaaggt 240  Q
    |||| ||||||||||||||||| ||||||  ||| ||||||||| |||||||||||    
T  47806326 tcctcgtgagcttagttcagttagttggtgaggacaatgcataatatatgcaaggt 47806271  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 240
Target Start/End: Original strand, 21341175 - 21341230
Alignment:
Q  183 tgtccttgtgagcttagttcagttggttggtagggagaatgcataaaatatgcaaggt 240  Q
    |||||| |||||||||| |||||||||  ||||||| ||||||||| |||||||||||    
T  21341175 tgtcctcgtgagcttagctcagttggt--gtagggacaatgcataatatatgcaaggt 21341230  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 240
Target Start/End: Complemental strand, 41763202 - 41763170
Alignment:
Q  208 gttggtagggagaatgcataaaatatgcaaggt 240  Q
    ||||||||||| |||||||||||||||||||||    
T  41763202 gttggtagggataatgcataaaatatgcaaggt 41763170  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 240
Target Start/End: Complemental strand, 47155175 - 47155119
Alignment:
Q  183 tgtccttgtgagcttagttcagttggttggtagggagaatgcataaaatatgcaaggt 240  Q
    |||||||| |||||||| ||||||||| | |||||| ||||||||| |||||||||||    
T  47155175 tgtccttgcgagcttagctcagttggtag-tagggacaatgcataatatatgcaaggt 47155119  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 240
Target Start/End: Complemental strand, 44406924 - 44406871
Alignment:
Q  183 tgtccttgtgagcttagttcagttggttggtagggagaatgcataaaatatgcaaggt 240  Q
    |||| |||||||||||| ||||||||||||    || |||||||||||||||||||||    
T  44406924 tgtctttgtgagcttagctcagttggttgg----gacaatgcataaaatatgcaaggt 44406871  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 240
Target Start/End: Original strand, 44454526 - 44454558
Alignment:
Q  208 gttggtagggagaatgcataaaatatgcaaggt 240  Q
    ||||||||||| |||||||||||||||||||||    
T  44454526 gttggtagggacaatgcataaaatatgcaaggt 44454558  T

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Target: scaffold1160 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1160
Description:

Target: scaffold1160; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 240
Target Start/End: Complemental strand, 1759 - 1727
Alignment:
Q  208 gttggtagggagaatgcataaaatatgcaaggt 240  Q
    ||||||||||| |||||||||||||||||||||    
T  1759 gttggtagggacaatgcataaaatatgcaaggt 1727  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 240
Target Start/End: Original strand, 26799198 - 26799230
Alignment:
Q  208 gttggtagggagaatgcataaaatatgcaaggt 240  Q
    ||||||||||| |||||||||||||||||||||    
T  26799198 gttggtagggacaatgcataaaatatgcaaggt 26799230  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 240
Target Start/End: Complemental strand, 35270749 - 35270696
Alignment:
Q  183 tgtccttgtgagcttagttcagttggttggtagggagaatgcataaaatatgcaaggt 240  Q
    |||||| |||||||||| ||||||||||||    || |||||||||||||||||||||    
T  35270749 tgtcctcgtgagcttagctcagttggttgg----gacaatgcataaaatatgcaaggt 35270696  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 240
Target Start/End: Complemental strand, 9842249 - 9842217
Alignment:
Q  208 gttggtagggagaatgcataaaatatgcaaggt 240  Q
    ||||||||||| |||||||||||||||||||||    
T  9842249 gttggtagggacaatgcataaaatatgcaaggt 9842217  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 240
Target Start/End: Complemental strand, 37413226 - 37413194
Alignment:
Q  208 gttggtagggagaatgcataaaatatgcaaggt 240  Q
    ||||||||||| |||||||||||||||||||||    
T  37413226 gttggtagggacaatgcataaaatatgcaaggt 37413194  T

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