View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17517_low_7 (Length: 249)

Name: NF17517_low_7

Description: NF17517

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF17517_low_7

[»] chr2 (5 HSPs)

Alignment Details

Target: chr2 (Bit Score: 181; Significance: 7e-98; HSPs: 5)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 181; E-Value: 7e-98

Query Start/End: Original strand, 11 - 249

Target Start/End: Original strand, 44992674 - 44992914

Alignment:

Q	11	cacagaaaaccaaaatgnnnnnnnttcattattgatgcagcctgaatgttttcatacattagatgaaggataagaatcaaccacataaaaagcaaaaagt	110	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	44992674	cacagaaaaccaaaatgaaaaaaattcattattgatgcagcctgaacgttttcatacattagatgaaggataagaatcaaccacataaaaagcaaaaagt	44992773	T

Q	111	ttggattcgtctccannnnnnnn--caattaagataaatctgggcacaaaagccatatatttgacaattttcagttgataaacccaatttgcccaagaaa	208	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	44992774	ttggattcgtctccattttttttttcaattaagataaatctgggcacaaaagccatatatttgacaattttcagttgataaacccaatttgcccaagaaa	44992873	T

Q	209	taaagatgagaaagtagcataatactttttgatatacttct	249	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	44992874	taaagatgagaaagtagcataatactttttgatatacttct	44992914	T

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Target: chr2; HSP #2

Raw Score: 78; E-Value: 2e-36

Query Start/End: Original strand, 156 - 249

Target Start/End: Original strand, 44980173 - 44980266

Alignment:

Q	156	aaaagccatatatttgacaattttcagttgataaacccaatttgcccaagaaataaagatgagaaagtagcataatactttttgatatacttct	249	Q
		\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	44980173	aaaagccatttatttgacaattttcagttgataaacccaattttcccaagaaataaagataagaaagtagcataataccttttgatatacttct	44980266	T

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Target: chr2; HSP #3

Raw Score: 58; E-Value: 2e-24

Query Start/End: Original strand, 152 - 249

Target Start/End: Original strand, 44965088 - 44965185

Alignment:

Q	152	gcacaaaagccatatatttgacaattttcagttgataaacccaatttgcccaagaaataaagatgagaaagtagcataatactttttgatatacttct	249	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\| \| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|
T	44965088	gcacaaaagccatttgtttgaaaattttctgttgttcaacccaatttacccaagaaataaagttgagaaagtagcatattactttttgatacacttct	44965185	T

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Target: chr2; HSP #4

Raw Score: 54; E-Value: 4e-22

Query Start/End: Original strand, 136 - 249

Target Start/End: Original strand, 44981284 - 44981397

Alignment:

Q	136	attaagataaatctgggcacaaaagccatatatttgacaattttcagttgataaacccaatttgcccaagaaataaagatgagaaagtagcataatactt	235	Q
		\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\| \| \|\|\|\| \|\|\|\|\|\|\|\| \|\| \|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|
T	44981284	attaagatatttcttggcacaaaagtcatttgtttgtcaattttctattaataaatccaatttacccaataaataaagatgagaaagtagcataatacat	44981383	T

Q	236	tttgatatacttct	249	Q
		\|\|\|\|\|\|\|\|\| \|\|\|\|
T	44981384	tttgatatatttct	44981397	T

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Target: chr2; HSP #5

Raw Score: 40; E-Value: 0.00000000000009

Query Start/End: Original strand, 35 - 125

Target Start/End: Original strand, 44980021 - 44980112

Alignment:

Q	35	ttcattattgatgcagcctgaatgttttcatacattagatgaaggataagaatca-accacataaaaagcaaaaagtttggattcgtctcca	125	Q
		\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	44980021	ttcattatagatgcagcccaaatcttttcctatattagatgaaggataagaatcatcccccaagaaaagcaaaaagtgtggattcgtctcca	44980112	T

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