View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17517_low_8 (Length: 237)
Name: NF17517_low_8
Description: NF17517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17517_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 44992894 - 44993114
Alignment:
| Q |
1 |
aatactttttgatatacttcttcttgccaatcacccccacttggctgtccagtatgtgctgttgaatccatagaatctacagcagatatattatgataca |
100 |
Q |
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| T |
44992894 |
aatactttttgatatacttcttcttgccaatcactcccacttggctgtccagtatgtgctgttgaatccatagaatctacagcagatatattatgataca |
44992993 |
T |
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| Q |
101 |
cacattagcatacaaagctaataaaatgtggaaatcttctgcttcttctgttttcactttgctttttaatagatatagaacaggtgggataatcacaagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
44992994 |
cacattagcatacaaagctaataaaatgtggaaatcttctgcttcttctgttttcactttactttttaatagatatagaacaggtgggataatcacaagt |
44993093 |
T |
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| Q |
201 |
aaacttatatgactttattct |
221 |
Q |
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||||||||||||||||||||| |
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| T |
44993094 |
aaacttatatgactttattct |
44993114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 44981377 - 44981512
Alignment:
| Q |
1 |
aatactttttgatatacttcttcttgccaatcacccccacttggctgtccagtatgtgctgttgaatccatagaatctacagcagatatattatgataca |
100 |
Q |
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||||| |||||||||| |||||||||||||||||| ||| |||| ||||| || |||||| |||||||| |||||||||| ||||||||||||||||| |
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| T |
44981377 |
aatacattttgatatatttcttcttgccaatcaccaccatttggttgtccggtctgtgctactgaatccagagaatctacaa-agatatattatgataca |
44981475 |
T |
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| Q |
101 |
cacattagcatacaaagctaataaaatgtggaaatct |
137 |
Q |
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| T |
44981476 |
cacattagcatacaaggctaataaaatgtggaaatct |
44981512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 3 - 137
Target Start/End: Original strand, 44965167 - 44965306
Alignment:
| Q |
3 |
tactttttgatatacttcttcttgccaatcacccccacttggctgtccagtatgtgctgttgaatccatagaatctacagcagatatattatga------ |
96 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||| || | |
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| T |
44965167 |
tactttttgatacacttcttcttgccaatcacccccacttgtctgtccagtctgtgctgttgaatccatagaatctacaacagatatatcattaactatg |
44965266 |
T |
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| Q |
97 |
tacacacattagcatacaaagctaataaaatgtggaaatct |
137 |
Q |
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| T |
44965267 |
tacacacataagcatacatagctaa-aaaatgtggaaatct |
44965306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 44980246 - 44980320
Alignment:
| Q |
1 |
aatactttttgatatacttcttcttgccaatcacccccacttggctgtccagtatgtgctgttgaatccatagaa |
75 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||| |||||| | ||| |||||||||| |||| |
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| T |
44980246 |
aataccttttgatatacttcttcttgccaatcacccccacttggctttccagtctttgcagttgaatccagagaa |
44980320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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