View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17518_high_10 (Length: 453)
Name: NF17518_high_10
Description: NF17518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17518_high_10 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 15 - 453
Target Start/End: Complemental strand, 5416647 - 5416216
Alignment:
| Q |
15 |
caaatttttattataatgagaaagaaaggtagatgtggcctctaggctctagcatataataagagaaaggaatgaaatgatgataacttgagaacatggt |
114 |
Q |
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| T |
5416647 |
caaatttatattataatgagaaagaaaggtagatgtggcctctaggctctagcatataataagagaaaggaaggaaatgatgataacttgagaacatggt |
5416548 |
T |
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| Q |
115 |
tggacttattgagtttcacatgaaagcacgatctcacccagctgctattgccaaagaattaaaggaaaaaagatgaannnnnnnccaaaatctaatgtgt |
214 |
Q |
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| T |
5416547 |
tggacttattgagtttcacatgaaagcacgatctcacccagctgctattgccaaagaattaaaggaaaagggatgaagggggggccaaaatctaatgtgt |
5416448 |
T |
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| Q |
215 |
tacaacaacaatcatgcccttgcaataacaatcataaccttctgtggggtcttcttcttatattctttgtatagcatgaaacaaaatcataaactaagca |
314 |
Q |
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| T |
5416447 |
tacaacaacaatcatgcccttgcaataacaatcataaccttcagtggggtcttcttcttatattctttgtatagcatgaaacaaaatcataaactaagca |
5416348 |
T |
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| Q |
315 |
gaaaccaaccgtgtattaacaattaatacaaatattcaaagatctcaaaatatgaaagatcttattctctcactttacttacatttattttaaacaactt |
414 |
Q |
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| T |
5416347 |
gaaaccaaccgtgcattaacaattaatacaaatattcaaagatctcaaaatatgaaagatcttattatctcactttacttacatt-------aacaactt |
5416255 |
T |
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| Q |
415 |
ttttaaaaaagttgaaatatgatacattattagtgaata |
453 |
Q |
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| T |
5416254 |
tttttaaaaagttgaaatatgatacattattagtgaata |
5416216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 284 - 349
Target Start/End: Complemental strand, 5435415 - 5435351
Alignment:
| Q |
284 |
tatagcatgaaacaaaatcataaactaagcagaaaccaaccgtgtattaacaattaatacaaatat |
349 |
Q |
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| T |
5435415 |
tataggatgaaacaaa-tcataaactaagcagaaaccaaccgtgcattagcggttaatataaatat |
5435351 |
T |
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