View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17518_high_15 (Length: 367)
Name: NF17518_high_15
Description: NF17518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17518_high_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 53064221 - 53064571
Alignment:
| Q |
1 |
aagaaatgtttaaaacttgagacataggactctctccaagcaaaattgttttttggaacacaaacatcctctgttattttaggaacaaagttatatgcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
53064221 |
aagaaatgtttaaaacttgagacataggactctctccaagcaaaattgttttttggaacacaaacatcctctgttattttaggaacaaaggtatatgcat |
53064320 |
T |
|
| Q |
101 |
tctgaaaatttaattatggaatgcaaatttgtgttccaaaaactaaattttgatttttctcaattagaagtaaatatgcatcagagtgactatgcttatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53064321 |
tctgaaaatttaattatggaatgcaaatttgtgttccaaaaactaaattttgatttttctcaattagaagtaaatatgcatcagagtgactatgcttatg |
53064420 |
T |
|
| Q |
201 |
ctcttaaagcactctgagacaccattagaaaaatctattcacgctctatatgattgcttctctttcaagtaaaatatatatctcaaatgaccaaaatatt |
300 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53064421 |
ctcttaaagcactctgagccaccattagaaaaatctattcacgctctatatgattgcttctctttcaagtaaaatatatatctcaaatgaccaaaatatt |
53064520 |
T |
|
| Q |
301 |
ggtcactcatatgttcgatctttcattcctttaaacatctatatttaacac |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53064521 |
ggtcactcatatgttcgatctttcattcctttaaacatctatatttaacac |
53064571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University