View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17518_high_17 (Length: 337)
Name: NF17518_high_17
Description: NF17518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17518_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 3367647 - 3367969
Alignment:
| Q |
1 |
aagatatattgctttgtttatatcttcaaccaaatctgtattagaatcaaatctattcttggagttgtaaaacatctcaaaaactttcaagcatgctaga |
100 |
Q |
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| T |
3367647 |
aagatatattgctttgtttatatcttcaaccaaatctgtattagaatcaaatctatttttggagttgtaaaacatctcaaaaactttcaagcatgcgaga |
3367746 |
T |
|
| Q |
101 |
tgaagttgtttgctaggtttaggtaaatcacacaatccatcaattagaacaagttcaaggagctctttcttctttttctcaattatttctctcacaaagt |
200 |
Q |
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| T |
3367747 |
tgaagttgtttgctaggtttaggtaaatcacacaatccatcaattagaacaagttcaaggagctctttcttctttttctcaactatttctctcacaaagt |
3367846 |
T |
|
| Q |
201 |
taattgaatcttcaatattaaattcagggttctccatcatgtttatcaaaacagaattcaatttcccttcttccttttccttctgcagaacaacatgaaa |
300 |
Q |
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| T |
3367847 |
taattgaatcttcaatattaaattcagggttctccatcatgtttatcaaaacagaattcaatttcccttcttccttttccttctgcagaacaacatgaaa |
3367946 |
T |
|
| Q |
301 |
atacccttattttcgataccctt |
323 |
Q |
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| T |
3367947 |
atacccttattttcgataccctt |
3367969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 3343159 - 3343454
Alignment:
| Q |
1 |
aagatatattgctttgtttatatcttcaaccaaatctgtattagaatcaaatctattcttggagttgtaaaacatctcaaaaactttcaagcatgctaga |
100 |
Q |
| |
|
|||||||||||||||||||||||| || ||||| |||||||| || |||||||| || ||||||||| ||||||||| ||||||||||||||||| ||| |
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| T |
3343159 |
aagatatattgctttgtttatatcctccaccaattctgtattggagtcaaatctgtttttggagttgaaaaacatctgaaaaactttcaagcatgacaga |
3343258 |
T |
|
| Q |
101 |
tgaagttgtttgctaggtttaggtaaatcacacaatccatcaattagaacaagttcaaggagctctttcttctttttctcaattatttctctcacaaagt |
200 |
Q |
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||||||||||||||||| ||||| |||||||| ||||||||| |||||||||||||||| | |||||||||||||||||| | |||| ||||||||| |
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| T |
3343259 |
tgaagttgtttgctaggcttaggcaaatcacataatccatcagttagaacaagttcaagaaactctttcttctttttctcgaccatttttctcacaaaag |
3343358 |
T |
|
| Q |
201 |
taattgaatcttcaatattaaattcagggttctccatcatgtttatcaaaacagaattcaatttcccttcttccttttccttctgcagaacaacat |
296 |
Q |
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||||||||||||||||| |||||||||||| || |||| ||| | ||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3343359 |
caattgaatcttcaatatcaaattcagggttgtctatcaagttgaccaaaacagaattcaatttcccttcttccttttccttctgcagaaccacat |
3343454 |
T |
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