View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17518_high_26 (Length: 253)
Name: NF17518_high_26
Description: NF17518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17518_high_26 |
 | |
|
| [»] chr8 (5 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 12 - 253
Target Start/End: Complemental strand, 27984048 - 27983806
Alignment:
| Q |
12 |
agcataggggaccttcacctaattcagggcactattttagctttgtgcgttctgctccagacaaatggtatttgatggatgatgataaggtaaaatatag |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27984048 |
agcataggggaccttcacctaattcagggcactattttagctttgtgcgttctgctccagacaaatggtatttgatggatgatgataaggtaaaatatag |
27983949 |
T |
|
| Q |
112 |
tggaaaattcttt---taggctagcttaaccctttttacctatttaaataggttctgtttgaaaataaaaagtgatagtataattagtattgagtcatgt |
208 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27983948 |
tggaaaattctttctgtaggctagcttaaccctttttacctatttaaataggttctgtttgaaaataaaaagtgatagtataattagtattgagtcatgt |
27983849 |
T |
|
| Q |
209 |
atatgctcatgcattgtttaattaatgactgtggtttttgcaaaa |
253 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
27983848 |
atatgctcatgcattgtttaattattgac--tggtttttgcaaaa |
27983806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 12 - 253
Target Start/End: Complemental strand, 28041350 - 28041108
Alignment:
| Q |
12 |
agcataggggaccttcacctaattcagggcactattttagctttgtgcgttctgctccagacaaatggtatttgatggatgatgataaggtaaaatatag |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28041350 |
agcataggggaccttcacctaattcagggcactattttagctttgtgcgttctgctccagacaaatggtatttgatggatgatgataaggtaaaatatag |
28041251 |
T |
|
| Q |
112 |
tggaaaattcttt---taggctagcttaaccctttttacctatttaaataggttctgtttgaaaataaaaagtgatagtataattagtattgagtcatgt |
208 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28041250 |
tggaaaattctttctgtaggctagcttaaccctttttacctatttaaataggttctgtttgaaaataaaaagtgatagtataattagtattgagtcatgt |
28041151 |
T |
|
| Q |
209 |
atatgctcatgcattgtttaattaatgactgtggtttttgcaaaa |
253 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
28041150 |
atatgctcatgcattgtttaattattgac--tggtttttgcaaaa |
28041108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 13 - 124
Target Start/End: Complemental strand, 27238635 - 27238524
Alignment:
| Q |
13 |
gcataggggaccttcacctaattcagggcactattttagctttgtgcgttctgctccagacaaatggtatttgatggatgatgataaggtaaaatatagt |
112 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27238635 |
gcatagaggaccttcacctaattcagggcattatttttgctttgtgcgttctgctccagacaaatggtatttgatggatgatgataaggtaaaatatagt |
27238536 |
T |
|
| Q |
113 |
ggaaaattcttt |
124 |
Q |
| |
|
|||||||||||| |
|
|
| T |
27238535 |
ggaaaattcttt |
27238524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 202 - 253
Target Start/End: Complemental strand, 27238489 - 27238438
Alignment:
| Q |
202 |
gtcatgtatatgctcatgcattgtttaattaatgactgtggtttttgcaaaa |
253 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
27238489 |
gtcatatatatgctcatgcattgtttaaataatgcctgtggtttttgcaaaa |
27238438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 187
Target Start/End: Complemental strand, 27238520 - 27238490
Alignment:
| Q |
157 |
taggttctgtttgaaaataaaaagtgatagt |
187 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
27238520 |
taggttctgtttgaaaataaaaagtgatagt |
27238490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 189
Target Start/End: Complemental strand, 46233785 - 46233705
Alignment:
| Q |
112 |
tggaaaattcttt---taggctagcttaaccctttttacctatttaaataggttctgtttgaaaataaaaagtgatagtat |
189 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||| ||| || | || ||||||||| |||||||| ||||||| |
|
|
| T |
46233785 |
tggaaaattctttctataggctagtttaaccctttttacctggttatatggtttttgtttgaaattaaaaagtaatagtat |
46233705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University