View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17518_high_28 (Length: 242)
Name: NF17518_high_28
Description: NF17518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17518_high_28 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 27 - 228
Target Start/End: Complemental strand, 34816730 - 34816529
Alignment:
| Q |
27 |
attcattccttggaaacatgtgaaaaaatcatccaaaattcatgacccaactctttaccggttcccaccctgccccatgtctgaaatgacacactctagt |
126 |
Q |
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| T |
34816730 |
attcattccttggaaacatgtgaaaaaatcatccaaaattcatgacccaactctttaccggttcccaccctgccccatgtctgaaatgacacactctagt |
34816631 |
T |
|
| Q |
127 |
cattgttaaaccgaaaagaatctagggaagacttctcggagaggatactcgctgacccacttatcatgccagaaaagaatatgtactcccaccatttccc |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34816630 |
cattgttaaaccgaaaagaatctagggaagacttctcggagaggatactcgctgacccacttatcatgccagaaaagaatatgtactcccaccatttccc |
34816531 |
T |
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| Q |
227 |
at |
228 |
Q |
| |
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|| |
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| T |
34816530 |
at |
34816529 |
T |
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