View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17518_high_3 (Length: 872)

Name: NF17518_high_3
Description: NF17518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17518_high_3
NF17518_high_3
[»] chr5 (12 HSPs)
chr5 (396-857)||(9618754-9619222)
chr5 (20-405)||(9617563-9617944)
chr5 (747-857)||(19969339-19969449)
chr5 (736-849)||(1347721-1347834)
chr5 (736-803)||(19807073-19807140)
chr5 (741-805)||(20112126-20112190)
chr5 (478-529)||(13712283-13712334)
chr5 (754-848)||(13711924-13712018)
chr5 (158-228)||(19805768-19805838)
chr5 (737-798)||(17392589-17392650)
chr5 (451-528)||(19806782-19806859)
chr5 (737-782)||(27358161-27358206)
[»] chr3 (6 HSPs)
chr3 (88-224)||(32242700-32242836)
chr3 (90-211)||(32225827-32225949)
chr3 (89-348)||(32225231-32225484)
chr3 (769-819)||(32226768-32226818)
chr3 (478-536)||(24890844-24890902)
chr3 (747-812)||(32241837-32241902)
[»] chr6 (2 HSPs)
chr6 (98-224)||(16259105-16259231)
chr6 (747-819)||(16258249-16258321)
[»] scaffold0009 (3 HSPs)
scaffold0009 (751-809)||(34169-34227)
scaffold0009 (751-809)||(21922-21980)
scaffold0009 (751-809)||(40799-40857)
[»] chr1 (1 HSPs)
chr1 (737-798)||(26052813-26052874)


Alignment Details
Target: chr5 (Bit Score: 415; Significance: 0; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 396 - 857
Target Start/End: Original strand, 9618754 - 9619222
Alignment:
Q  396 cttttattatacatctattttgcttaacaagctattatttgattttgtttgtatttttgcagatggggaaaactcatcccattgaagaaatcaattcata 495  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  9618754 cttttattatacatctattttgcttaacaagctattatttgattttgtttgtatttttgcagttgtggaaaactcatcccattgaagaaatcaattcata 9618853  T
Q  496 ttacattgacattcccgtgtttgaaaacttaaccgtacttcgactatattggatttttcatgtcctttttgactgggatgatgtaatgaaaatgctccaa 595  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9618854 ttacattgacattcccgtgtttgaaaacttaacagtacttcgactatattggatttttcatgtcctttttgactgggatgatgtaatgaaaatgctccaa 9618953  T
Q  596 agttgtcccaaacttcaagattttaccatttcaaaggtaattgtttgtcacgtccgtagatagtgttaatggtttttatttattctct-------cgttt 688  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||       |||||    
T  9618954 agttgtcccaaacctcaagattttaccatttcgaaggtaattgtttgtcacgtccgtagatagtgttaatggcttttatttattctctctttaaccgttt 9619053  T
Q  689 taacaaatcctattttatttttgattgacagtggacaagcgattcagaaaccaaagaggattggaaatacccacatcatgttcctgaatgtgtttcatct 788  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9619054 taacaaatcctattttatttttgattgacagtggacaagcgattcagaaaccaaagaggattggaaatacccacatcatgttcctgaatgtgtttcatct 9619153  T
Q  789 catttaacaacatgtaatattttacactatctagatgtggaacctgattttcgatttgcaaggtatatt 857  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9619154 catttaacaacatgtaacattttacactatctagatgtggaacctgattttcgatttgcaaggtatatt 9619222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 20 - 405
Target Start/End: Original strand, 9617563 - 9617944
Alignment:
Q  20 tgccgcctaccattttctcctcctgcgaaacacttgtgattctccatttgtggagtttacgtgtagccactatgactcattgctctgttcatcttccttt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  9617563 tgccgcctaccattttctcctcctgcgaaacacttgtgattctccattt-tggagtttacgtgtagccactatgactcattgttctgttcatcttccttt 9617661  T
Q  120 acttaagaccctggatctgatggatgttcgtttcgatgatatggaggatttcaagaaacttatctatgggtgtcccatattagagaatttgacaatttca 219  Q
    |||||||||||||||| ||||| |||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  9617662 acttaagaccctggatatgatgaatgtccgtttcgatgatatggaggatttaaataaacttatctatgggtgtcccatattagagaatttgacaatttca 9617761  T
Q  220 tatgttaaagcagcaagtgccggaaacattacagctggaggagggtactctaaacccctaccgaagttgatcaaagctagtattcatttattcgaggtaa 319  Q
    ||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  9617762 tatgttaaagcagaaagtgccggaagcattatagctggaggagggtactctaaacccctaccgaagttgatcaaagctagtattcatttattcgagg--- 9617858  T
Q  320 ttccactcagagcagtttctaatgtgcaacatctaagtgtactcgaggtaataagatatatcatatgatgcatgctcttttattat 405  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  9617859 ttccactcagagcagtttctaatgtgcaacatctaagtgtactcgaggtaataagatatatcatattatgcatgctcttttattat 9617944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 747 - 857
Target Start/End: Complemental strand, 19969449 - 19969339
Alignment:
Q  747 gattggaaatacccacatcatgttcctgaatgtgtttcatctcatttaacaacatgtaatattttacactatctagatgtggaacctgattttcgatttg 846  Q
    ||||||||||||||| |||||||||| ||||||||||  |||||| | |||||||||||||||  |||||||| || ||||||| |||||||||||||||    
T  19969449 gattggaaatacccatatcatgttcccgaatgtgttttgtctcatcttacaacatgtaatattacacactatcaagctgtggaagctgattttcgatttg 19969350  T
Q  847 caaggtatatt 857  Q
    ||| |||||||    
T  19969349 caacgtatatt 19969339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 736 - 849
Target Start/End: Complemental strand, 1347834 - 1347721
Alignment:
Q  736 aaaccaaagaggattggaaatacccacatcatgttcctgaatgtgtttcatctcatttaacaacatgtaatattttacactatctagatgtggaacctga 835  Q
    ||||||||| |||||||| ||||||| ||||||||||| |||||||||| |||||| | ||||||||||||||  ||||||||| || ||||||| ||||    
T  1347834 aaaccaaagcggattggatatacccatatcatgttcctcaatgtgtttcctctcatcttacaacatgtaatatcatacactatcaagctgtggaagctga 1347735  T
Q  836 ttttcgatttgcaa 849  Q
    ||| ||||||||||    
T  1347734 tttccgatttgcaa 1347721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 736 - 803
Target Start/End: Original strand, 19807073 - 19807140
Alignment:
Q  736 aaaccaaagaggattggaaatacccacatcatgttcctgaatgtgtttcatctcatttaacaacatgt 803  Q
    |||||| | ||||||||||| ||||| |||||||||||||||||||| | ||| || |||||||||||    
T  19807073 aaaccacaaaggattggaaacacccatatcatgttcctgaatgtgttacctctaatctaacaacatgt 19807140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 741 - 805
Target Start/End: Original strand, 20112126 - 20112190
Alignment:
Q  741 aaagaggattggaaatacccacatcatgttcctgaatgtgtttcatctcatttaacaacatgtaa 805  Q
    |||||| |||||||||||||| || ||||||||||||||||||  |||| | | |||||||||||    
T  20112126 aaagagaattggaaatacccatatgatgttcctgaatgtgttttgtctcgtctcacaacatgtaa 20112190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 478 - 529
Target Start/End: Complemental strand, 13712334 - 13712283
Alignment:
Q  478 tgaagaaatcaattcatattacattgacattcccgtgtttgaaaacttaacc 529  Q
    |||||||||||||||||||||||  | | |||| ||||||||||||||||||    
T  13712334 tgaagaaatcaattcatattacaaaggctttcctgtgtttgaaaacttaacc 13712283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 754 - 848
Target Start/End: Complemental strand, 13712018 - 13711924
Alignment:
Q  754 aatacccacatcatgttcctgaatgtgtttcatctcatttaacaacatgtaatattttacactatctagatgtggaacctgattttcgatttgca 848  Q
    |||||||  ||||||||||| || ||||||| |||||||||||||| |||   ||| || |||||  || ||||||| ||||||| |||||||||    
T  13712018 aataccctgatcatgttcctaaaggtgtttcctctcatttaacaacttgtcgaattataaactatgaagttgtggaagctgatttccgatttgca 13711924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 228
Target Start/End: Original strand, 19805768 - 19805838
Alignment:
Q  158 atatggaggatttcaagaaacttatctatgggtgtcccatattagagaatttgacaatttcatatgttaaa 228  Q
    |||| |||||||||| ||||||| | | ||||||||||||||| |||||||||| || |  ||||||||||    
T  19805768 atatcgaggatttcatgaaacttctttctgggtgtcccatattggagaatttgaaaactagatatgttaaa 19805838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 737 - 798
Target Start/End: Original strand, 17392589 - 17392650
Alignment:
Q  737 aaccaaagaggattggaaatacccacatcatgttcctgaatgtgtttcatctcatttaacaa 798  Q
    ||||| |||| ||||| |||| ||| |||||||||| ||||||||||| |||||| ||||||    
T  17392589 aaccatagagcattgggaatatccagatcatgttccagaatgtgtttcgtctcatctaacaa 17392650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 451 - 528
Target Start/End: Original strand, 19806782 - 19806859
Alignment:
Q  451 tttgcagatggggaaaactcatcccattgaagaaatcaattcatattacattgacattcccgtgtttgaaaacttaac 528  Q
    ||||||||||| || || || | ||| |||||||||||||| ||||||||  | | || |||||||||||||||||||    
T  19806782 tttgcagatggagacaaatcttgccaatgaagaaatcaatttatattacaaaggcttttccgtgtttgaaaacttaac 19806859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 737 - 782
Target Start/End: Complemental strand, 27358206 - 27358161
Alignment:
Q  737 aaccaaagaggattggaaatacccacatcatgttcctgaatgtgtt 782  Q
    ||||||||| ||| ||||||||||| ||||||||||||| ||||||    
T  27358206 aaccaaagatgataggaaatacccagatcatgttcctgagtgtgtt 27358161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 88 - 224
Target Start/End: Complemental strand, 32242836 - 32242700
Alignment:
Q  88 actatgactcattgctctgttcatcttcctttacttaagaccctggatctgatggatgttcgtttcgatgatatggaggatttcaagaaacttatctatg 187  Q
    |||||| ||||||  |||||||||||||||| |||||| || ||  || |||| ||||||| ||| ||||||||||| ||||| ||||||||||| | ||    
T  32242836 actatgtctcattattctgttcatcttccttcacttaaaacactacatatgattgatgttcatttggatgatatggaagatttaaagaaacttatatctg 32242737  T
Q  188 ggtgtcccatattagagaatttgacaatttcatatgt 224  Q
    |||||||||| |||||| |||||| |||| |||||||    
T  32242736 ggtgtcccatgttagaggatttgaaaattgcatatgt 32242700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 90 - 211
Target Start/End: Original strand, 32225827 - 32225949
Alignment:
Q  90 tatgactcattgctctgttcatcttcctttacttaagaccctggatctgatggatgttcgtttcg-atgatatggaggatttcaagaaacttatctatgg 188  Q
    |||| ||||||| ||||||||||||||||||||||| ||  |  ||||||| | ||||||||| | || |||| |||||||| ||||||||||| | |||    
T  32225827 tatgtctcattgttctgttcatcttcctttacttaaaacgttacatctgattgttgttcgttttggattatatcgaggatttaaagaaacttatatctgg 32225926  T
Q  189 gtgtcccatattagagaatttga 211  Q
    |||||||||||||||| ||||||    
T  32225927 gtgtcccatattagaggatttga 32225949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 89 - 348
Target Start/End: Complemental strand, 32225484 - 32225231
Alignment:
Q  89 ctatgactcattgctctgttcatcttcctttacttaagaccctggatctgatggatgttcgtttcgatgatatggaggatttcaagaaacttatctatgg 188  Q
    ||||| ||||||| ||| ||||||||||||||||||| |   |  ||||||| || |||| ||| |||||||| |||||||| ||||||||||| | ||     
T  32225484 ctatgtctcattgttcttttcatcttcctttacttaaaaagttacatctgattgacgttcatttggatgatatcgaggatttaaagaaacttatatctga 32225385  T
Q  189 gtgtcccatattagagaatttgacaatttcatatgttaaagcagcaagtgccggaaaca---ttacagctggaggagggtactctaaacccctaccgaag 285  Q
    || ||||||||||||| |||||| ||  |||||||| |   || |||||| |||   |    |||||||||||||   ||||||||||||| || | |||    
T  32225384 gtttcccatattagaggatttgaaaacatcatatgtca---catcaagtgtcggggtcgagtttacagctggagg---gtactctaaacccttatccaag 32225291  T
Q  286 ttgatcaaagctagtattcatttattcgaggtaattccactcagagcagtttctaatgtgcaa 348  Q
    ||||| ||||||| ||| | ||||||||| |   |||| ||||||| ||||||||||||||||    
T  32225290 ttgattaaagctaatatccgtttattcgatg---ttccgctcagagtagtttctaatgtgcaa 32225231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 769 - 819
Target Start/End: Original strand, 32226768 - 32226818
Alignment:
Q  769 ttcctgaatgtgtttcatctcatttaacaacatgtaatattttacactatc 819  Q
    ||||||||||||||||||| |||||||||||||| || |||||| ||||||    
T  32226768 ttcctgaatgtgtttcatcccatttaacaacatgcaaaattttagactatc 32226818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 478 - 536
Target Start/End: Original strand, 24890844 - 24890902
Alignment:
Q  478 tgaagaaatcaattcatattacattgacattcccgtgtttgaaaacttaaccgtacttc 536  Q
    |||||||||||||||||||||||  |   |||| ||||||||||||||||||| |||||    
T  24890844 tgaagaaatcaattcatattacaaaggttttcctgtgtttgaaaacttaaccgaacttc 24890902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 747 - 812
Target Start/End: Complemental strand, 32241902 - 32241837
Alignment:
Q  747 gattggaaatacccacatcatgttcctgaatgtgtttcatctcatttaacaacatgtaatatttta 812  Q
    ||||||||| ||||| ||   |||||||| ||||||||||| |||||||||||||| || ||||||    
T  32241902 gattggaaacacccatatacggttcctgattgtgtttcatcccatttaacaacatgcaaaatttta 32241837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 9e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 98 - 224
Target Start/End: Complemental strand, 16259231 - 16259105
Alignment:
Q  98 attgctctgttcatcttcctttacttaagaccctggatctgatggatgttcgtttcgatgatatggaggatttcaagaaacttatctatgggtgtcccat 197  Q
    |||| ||||||||||||||||||||||| || ||  ||||||  ||||||||||| |||||||| |||||||| ||||||||||| |  ||| |||||||    
T  16259231 attgttctgttcatcttcctttacttaaaacgcttcatctgagcgatgttcgttttgatgatatcgaggatttaaagaaacttatatccgggagtcccat 16259132  T
Q  198 attagagaatttgacaatttcatatgt 224  Q
     |||||| |||||| || | |||||||    
T  16259131 gttagaggatttgaaaactgcatatgt 16259105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 747 - 819
Target Start/End: Complemental strand, 16258321 - 16258249
Alignment:
Q  747 gattggaaatacccacatcatgttcctgaatgtgtttcatctcatttaacaacatgtaatattttacactatc 819  Q
    ||||||||||||||| ||   |||||||| ||||||||||| |||||||||||||| || |||||| ||||||    
T  16258321 gattggaaatacccatatacggttcctgagtgtgtttcatcccatttaacaacatgcaaaattttagactatc 16258249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 751 - 809
Target Start/End: Original strand, 34169 - 34227
Alignment:
Q  751 ggaaatacccacatcatgttcctgaatgtgtttcatctcatttaacaacatgtaatatt 809  Q
    ||||||||| | ||||| ||||||||||||||||||||||| | ||||| |||||||||    
T  34169 ggaaataccgaaatcatattcctgaatgtgtttcatctcatcttacaacgtgtaatatt 34227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 751 - 809
Target Start/End: Original strand, 21922 - 21980
Alignment:
Q  751 ggaaatacccacatcatgttcctgaatgtgtttcatctcatttaacaacatgtaatatt 809  Q
    ||||||||| | ||||| |||||||||||||||| |||||| | |||||||| ||||||    
T  21922 ggaaataccaagatcatattcctgaatgtgtttcgtctcatcttacaacatgcaatatt 21980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 751 - 809
Target Start/End: Original strand, 40799 - 40857
Alignment:
Q  751 ggaaatacccacatcatgttcctgaatgtgtttcatctcatttaacaacatgtaatatt 809  Q
    ||||||||| | |||||||||||||||||||||| |||||| | ||||||  |||||||    
T  40799 ggaaataccaagatcatgttcctgaatgtgtttcgtctcatcttacaacaattaatatt 40857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 737 - 798
Target Start/End: Complemental strand, 26052874 - 26052813
Alignment:
Q  737 aaccaaagaggattggaaatacccacatcatgttcctgaatgtgtttcatctcatttaacaa 798  Q
    ||||| |||| ||||| |||| ||| |||||||||| |||||||||||||||||| ||||||    
T  26052874 aaccatagagcattgggaatatccagatcatgttccagaatgtgtttcatctcatctaacaa 26052813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University