View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17518_high_30 (Length: 235)
Name: NF17518_high_30
Description: NF17518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17518_high_30 |
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Alignment Details
Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 37306179 - 37306107
Alignment:
| Q |
1 |
tgctgatttcaaatataacaaacgaatttaacatgcattttaattatgcttaaaaattcttagaagcataaag |
73 |
Q |
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| T |
37306179 |
tgctgatttcaaatataacaaaagaatttaacatgcattttaattatgcttaaaaattcttagaagcataaag |
37306107 |
T |
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Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 168 - 235
Target Start/End: Complemental strand, 37306014 - 37305947
Alignment:
| Q |
168 |
tcatgttattgatgtttttgtttcctttttgaagtggcacattaatctcattgaaacaccgctaaagc |
235 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37306014 |
tcatgttattgatgtttttgtttcctttttgaagtggcacattaatctcattgaaacaccgctaaagc |
37305947 |
T |
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