View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17518_high_34 (Length: 215)
Name: NF17518_high_34
Description: NF17518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17518_high_34 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 20595049 - 20595247
Alignment:
| Q |
1 |
agaataatagggttcatatgtatgtaatacactctgcagatgaaccctttgctaatctggaccctttagatgaagccaatgccttccctataccaaatcc |
100 |
Q |
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| T |
20595049 |
agaataatagggttcatatgtatgtaatacactctgcagatgaaccctttgctaatctggaccctttagatgaagccaatgccttccctataccaaatcc |
20595148 |
T |
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| Q |
101 |
tggagttgtgatagaggaaatagaagatgatgcaggaaatgtgggagggccagttatgaaccttcccatgcttgagtacccagtaggcaatgttgttag |
199 |
Q |
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| T |
20595149 |
tagagttgtgatagaggaaatagtagatgatgcaggaaatgtgggagggccagttatgaaccttcccatgcttgagtacccagtaggcaatgttgttag |
20595247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 8695995 - 8696193
Alignment:
| Q |
1 |
agaataatagggttcatatgtatgtaatacactctgcagatgaaccctttgctaatctggaccctttagatgaagccaatgccttccctataccaaatcc |
100 |
Q |
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| T |
8695995 |
agaataatagggttcatatgtatgtaatacactctgcagatgaaccctttgctaatctggaccctttagatgaagccaatgccttccctataccaaatcc |
8696094 |
T |
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| Q |
101 |
tggagttgtgatagaggaaatagaagatgatgcaggaaatgtgggagggccagttatgaaccttcccatgcttgagtacccagtaggcaatgttgttag |
199 |
Q |
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| T |
8696095 |
tggagttgtgatagaggaagtagtagatgatgcaggaaatgtgggagggccagttatgaaccttcccatgcttgagtacccaataggcaatgttgttag |
8696193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 108
Target Start/End: Complemental strand, 37105447 - 37105400
Alignment:
| Q |
61 |
accctttagatgaagccaatgccttccctataccaaatcctggagttg |
108 |
Q |
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| T |
37105447 |
accctttagatgaagccaatgactttcctgtaccaaatgctggagttg |
37105400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 123
Target Start/End: Original strand, 20621057 - 20621127
Alignment:
| Q |
53 |
taatctggaccctttagatgaagccaatgccttccctataccaaatcctggagttgtgatagaggaaatag |
123 |
Q |
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| T |
20621057 |
taatctgaatcctttagatgaagcaaatgacttccctgtaccaaatgttggtgttgtgttggaggaaatag |
20621127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 123
Target Start/End: Original strand, 23329452 - 23329522
Alignment:
| Q |
53 |
taatctggaccctttagatgaagccaatgccttccctataccaaatcctggagttgtgatagaggaaatag |
123 |
Q |
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| T |
23329452 |
taatctgaatcctttagatgaagcaaatgacttccctgtaccaaatgttggtgttgtgttggaggaaatag |
23329522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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