View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17518_high_36 (Length: 207)
Name: NF17518_high_36
Description: NF17518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17518_high_36 |
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Alignment Details
Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 16 - 192
Target Start/End: Complemental strand, 36826407 - 36826228
Alignment:
| Q |
16 |
aatatcctcggtaattcaatttttagggcttacaatttcaattagtttatgaattagggtttcgtgtttcttaattatttatttatt----gtgtttata |
111 |
Q |
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| T |
36826407 |
aatatcctcggtaattcaatttt-agggcttacaatttcaattagtttatgaattagggtttcttgtttcttaattatttatttatttattgtgtttata |
36826309 |
T |
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| Q |
112 |
gcgagagagaaagcaatggttgtgaatttggagtttataaaagcaattgttacagctgaagagattttattgcttgatcct |
192 |
Q |
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| T |
36826308 |
gcgagagagaaagcaatggttgtgaatttggagtttataaaagcaattgttacagctgaagagattttattgcttgatcct |
36826228 |
T |
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Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 16 - 192
Target Start/End: Complemental strand, 33433386 - 33433206
Alignment:
| Q |
16 |
aatatcctcggtaattcaatttttagggcttacaatttcaat-tagtttatgaattagggtttcgtgtttcttaatta----tttatttattgtgtttat |
110 |
Q |
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| T |
33433386 |
aatatcctcgataattcaatttt-agggtttacaatttcaatctagtttgtgaattaggatttcatgtttcttaattaattctttatttattgtgttaat |
33433288 |
T |
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| Q |
111 |
agcgagagagaaagcaatggttgtgaatttggagtttataaaagcaattgttacagctgaagagattttattgcttgatcct |
192 |
Q |
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| T |
33433287 |
aacgagaaagaaagccatggtagtgaatttggagtttataaaagcaattgttacattgaaagagattttgttacttgatcct |
33433206 |
T |
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Target: chr3 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 16 - 192
Target Start/End: Complemental strand, 19252164 - 19251985
Alignment:
| Q |
16 |
aatatcctcggtaattcaatttttagggcttacaatttcaat-tagtttatgaattagggtttcgtgtttcttaattatttatttatt---gtgtttata |
111 |
Q |
| |
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|||||||||| |||||||||||| |||| ||||||||||||| |||||| ||||||||| |||| ||||| ||||||| || |||||| ||||| ||| |
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| T |
19252164 |
aatatcctcgataattcaatttt-agggtttacaatttcaatctagtttgtgaattaggatttcatgtttattaattaattctttattattgtgttaata |
19252066 |
T |
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| Q |
112 |
gcgagagagaaagcaatggttgtgaatttggagtttataaaagcaattgttacagctgaagagattttattgcttgatcct |
192 |
Q |
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| T |
19252065 |
acgagaaataaagccatggtagtgaatttggagtttataaaagcaactgttacattgaaagagattttgttacttgatcct |
19251985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 86 - 131
Target Start/End: Complemental strand, 25442175 - 25442130
Alignment:
| Q |
86 |
ttaattatttatttattgtgtttatagcgagagagaaagcaatggt |
131 |
Q |
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| T |
25442175 |
ttaattaattatttattgtgttaatagcgtgagagaaagccatggt |
25442130 |
T |
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