View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17518_high_7 (Length: 621)
Name: NF17518_high_7
Description: NF17518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17518_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-126; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 272 - 566
Target Start/End: Complemental strand, 40028414 - 40028129
Alignment:
| Q |
272 |
atgatccacttaaaaatcaaatatcaaattttatcgacagaattaaatctacaaaacaaatgacccttaacctcatgttttctcatacaccttgggttac |
371 |
Q |
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| T |
40028414 |
atgatccacttaaaaatcaaatatcaaattttatcgacagaattaaatctacaaaacaaatgacccttaacctcatgttttctcatacaccttgggttac |
40028315 |
T |
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| Q |
372 |
aattaattaaagttaaatatttttaatgattttgcgattattattgattaatattgtnnnnnnnnnnnnnnnnnnnnctttaaaccatatatgaactaaa |
471 |
Q |
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| T |
40028314 |
aattaattaaagttaaatatttttaatgattttgcgattattattgattaatattgt---------aaaaaaaaaaactttaaaccatatatgaactaaa |
40028224 |
T |
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| Q |
472 |
tctatcttcacatttcttgtgataaattaaatcctaaaattttcggtagaaagagtaagaaagaaaatggaaaagtttagatttctgaatctgaa |
566 |
Q |
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| T |
40028223 |
tctatcttcacatttcttgtgataaattaaatcctaaaattttcggtagaaagagtaagaaagaaaatggaaaagtttagatttctgaatctgaa |
40028129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 9 - 269
Target Start/End: Complemental strand, 40028745 - 40028478
Alignment:
| Q |
9 |
gaagaatataagggtttttgaccaaccaaaacaaacactctaaatcaagaatagagatatgaaaaagggtttgaaaactattcaaaatacatacaaggtc |
108 |
Q |
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| T |
40028745 |
gaagaatataagggtttttgacca-ctaaaacaaacactctaaatcaagaattgagatatgaaaaagggtttgaaaactatttaaaatacatacaaggtc |
40028647 |
T |
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| Q |
109 |
tc-------nnnnnnnnatagggaaaccaccgatgttactttgatgacatacataatctcttccaccttcaagttc-ttgatnnnnnnntaaccttatta |
200 |
Q |
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| T |
40028646 |
tctttttttttttttttatagggaaaccaccgatgttactttgatgacatacataatctcttccaccttcaagttctttgataaaaaaataacctcatta |
40028547 |
T |
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| Q |
201 |
tgaccctgtcaaatcttctaaattgttgtatgtcatattaaattaaatattttcagtgatttttattcc |
269 |
Q |
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| T |
40028546 |
tgaccctgccaaatcttctaaattgttgcatgtcatattaaattaaatattttcagtgatttttattcc |
40028478 |
T |
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