View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17518_high_9 (Length: 505)

Name: NF17518_high_9
Description: NF17518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17518_high_9
NF17518_high_9
[»] chr1 (2 HSPs)
chr1 (20-496)||(23458214-23458690)
chr1 (243-358)||(23462316-23462431)
[»] scaffold0046 (1 HSPs)
scaffold0046 (284-357)||(74565-74638)


Alignment Details
Target: chr1 (Bit Score: 457; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 20 - 496
Target Start/End: Original strand, 23458214 - 23458690
Alignment:
Q  20 aaacatactaaataggagttcatagatacgatatataatcccaaatctaaaaacaaaacacaaatgatcccaaaatgaaacccatacaagttcacaaaga 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  23458214 aaacatactaaataggagttcatagatacgatatataatcccaaatctaaaaacaaaacacaaaggatcccaaaatgaaacccatacaagttcacaaaga 23458313  T
Q  120 gttcaaaaggcttcaactacaaaaatttaaggcgttaatcccttgcaatacctttcatcaaggtaaactttctatccaaaacatagatgaataattttct 219  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23458314 gttcaaaaggcttcaactacaaaaatttaaggcgttaatccattgcagtacctttcatcaaggtaaactttctatccaaaacatagatgaataattttct 23458413  T
Q  220 ccgatccaattaaaatggtcatggtttaatttcagatatagaaactgaaactttctttagggctttatcaaacccagctttgtggtgcattggaatttca 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23458414 ccgatccaattaaaatggtcatggtttaatttcagatatagaaactgaaactttctttagggctttatcaaacccagctttgtggtgcattggaatttca 23458513  T
Q  320 tccctcaattcttcaattttagccttcaactcttcaatttcagccgtcaaatctttagtttcaagctccttcttttcgacaatgtattctttgatgttta 419  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  23458514 tccctcgattcttcaattttagccttcaactcttcaatttcagccgtcaaatctttagtttcaagctccttcttttcgacaatgtcttctttgatgttta 23458613  T
Q  420 gttttattttaatcttggtattttcctccatcaaaccttctactctttccactaactcactcttttgcaagaataat 496  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23458614 gttttattttaatcttggtattttcctccatcaaaccttctactctttccactaactcactcttttgcaagaataat 23458690  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 243 - 358
Target Start/End: Original strand, 23462316 - 23462431
Alignment:
Q  243 gtttaatttcagatatagaaactgaaactttctttagggctttatcaaacccagctttgtggtgcattggaatttcatccctcaattcttcaattttagc 342  Q
    |||||| ||||||||| |||||| ||| || ||| |  || |||||||||||||| ||||  |||| |||||||||| || |||  |||||||||| |||    
T  23462316 gtttaagttcagatattgaaactaaaatttgcttgactgccttatcaaacccagcattgtactgcactggaatttcagccttcacctcttcaatttcagc 23462415  T
Q  343 cttcaactcttcaatt 358  Q
     ||||| |||||||||    
T  23462416 tttcaaatcttcaatt 23462431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 357
Target Start/End: Original strand, 74565 - 74638
Alignment:
Q  284 ttatcaaacccagctttgtggtgcattggaatttcatccctcaattcttcaattttagccttcaactcttcaat 357  Q
    |||||||||||||| ||||| |||| ||||||||||  | |||  |||||||||| ||| ||||| ||||||||    
T  74565 ttatcaaacccagcattgtgctgcactggaatttcagtcttcacctcttcaatttcagctttcaaatcttcaat 74638  T

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