View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17518_low_11 (Length: 451)

Name: NF17518_low_11
Description: NF17518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17518_low_11
NF17518_low_11
[»] chr8 (15 HSPs)
chr8 (70-439)||(15639315-15639680)
chr8 (72-338)||(15616147-15616414)
chr8 (70-300)||(15607797-15608023)
chr8 (70-192)||(15627554-15627676)
chr8 (70-192)||(15651321-15651443)
chr8 (224-408)||(15627748-15627937)
chr8 (224-408)||(15651515-15651704)
chr8 (259-364)||(12064477-12064583)
chr8 (379-439)||(15616412-15616472)
chr8 (111-192)||(12064705-12064785)
chr8 (70-191)||(12068494-12068614)
chr8 (70-164)||(39465058-39465152)
chr8 (111-171)||(15996947-15997006)
chr8 (409-439)||(15627958-15627988)
chr8 (409-439)||(15651725-15651755)
[»] chr1 (2 HSPs)
chr1 (81-170)||(39404197-39404285)
chr1 (226-262)||(39404067-39404103)
[»] scaffold0095 (1 HSPs)
scaffold0095 (70-164)||(23349-23443)
[»] chr2 (1 HSPs)
chr2 (70-117)||(12082356-12082403)
[»] chr5 (1 HSPs)
chr5 (72-134)||(20149841-20149903)


Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 70 - 439
Target Start/End: Original strand, 15639315 - 15639680
Alignment:
Q  70 gtgagccatagttggatgctattctcattttcggatgtcatatttactggtttccattagagatcatactcatggggttgatttttatatttcaggtgaa 169  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  15639315 gtgagccatagttggatgctattctcatttttggatgtcatatttactggtttccattagagatcatactcatggggttgagttttatatttcaggtgaa 15639414  T
Q  170 acggtacatgattacgcctacccatgttggaagggaggaaaattaatgcctccaatagggatttgagctatagccctacacagtctaagttagcaatgat 269  Q
    || ||||||||||||||      ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  15639415 acagtacatgattacgca-----atgttggaagggaggcaaattaatgcctctaatagggatttgagctatagccctacacagtctaagttagcaatgat 15639509  T
Q  270 aatgtccctgc-tgcacaagaggctgccacatattctgctcaagcattttctgaagtgaaagccatcctagaggaagttgaagaagcaacagaggaaggc 368  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15639510 aatgtccctgcctgcacaagaggcagccacatattctgctcaagcattttctgaagtgaaagccatcctagaggaagttgaagaagcaacagaggaaggc 15639609  T
Q  369 tgaggcctcactatactatggtaaaagtttgtgtgaattttgtttagaaactaaataatattgttgaattt 439  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  15639610 tgaggcttcactatactatggtaaaagtttgtgtgaatttcgtttagaaactaaataatattgttgaattt 15639680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 72 - 338
Target Start/End: Original strand, 15616147 - 15616414
Alignment:
Q  72 gagccatagttggatgctattctcattttcggatgtcatatttactggtttccattagagatcatactcatggggttgatttttatatttcaggtgaaac 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  15616147 gagccatagttggatgctattctcattttcggatgtcatatttactggtttccattagagatcatactcatggggttgagtttaatatttcaggtgaaac 15616246  T
Q  172 ggtacatgattacgcctacccatgttggaagggaggaaaattaatgcctccaatagggatttgagctatagccctacacagtctaagttagcaatgataa 271  Q
     ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  15616247 agtacatgattacgcctacccatgttggaagggaggcaaattaatgcctctaatagggatttgagctatagccctacacagtctaagttagcaatgataa 15616346  T
Q  272 tgtccctg-ctgcacaagaggctgccacatattctgctcaagcattttctgaagtgaaagccatccta 338  Q
    ||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  15616347 tgtccgtgcctgcacaagaggcagccacatattctgctcaagcattttctgaagtgaaagccatccta 15616414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 70 - 300
Target Start/End: Original strand, 15607797 - 15608023
Alignment:
Q  70 gtgagccatagttggatgctattctcattttcggatgtcatatttactggtttccattagagatcatactcatggggttgatttttatatttcaggtgaa 169  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  15607797 gtgagccatagttggatgctattctcatttttggatgtcatatttactggtttccattagagatcatactcatggggttgagttttatatttcaggtgaa 15607896  T
Q  170 acggtacatgattacgcctacccatgttggaagggaggaaaattaatgcctccaatagggatttgagctatagccctacacagtctaagttagcaatgat 269  Q
    || |||||||||||||     | ||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  15607897 acagtacatgattacg-----caatgttggaacggaggcaaattaatgcctctaatagggatttgagctatagccctacacagtctaagttagcaatgat 15607991  T
Q  270 aatgtccctg-ctgcacaagaggctgccacat 300  Q
    |||||||||| ||||||||||||| |||||||    
T  15607992 aatgtccctgcctgcacaagaggcagccacat 15608023  T

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Target: chr8; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 70 - 192
Target Start/End: Original strand, 15627554 - 15627676
Alignment:
Q  70 gtgagccatagttggatgctattctcattttcggatgtcatatttactggtttccattagagatcatactcatggggttgatttttatatttcaggtgaa 169  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  15627554 gtgagccatagttggatgctattctcatttttggatgtcatatttactggtttccattagaggtcatactcatggggttgagttttatatttcaggtgaa 15627653  T
Q  170 acggtacatgattacgcctaccc 192  Q
    || ||||||||||||||||||||    
T  15627654 acagtacatgattacgcctaccc 15627676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 70 - 192
Target Start/End: Original strand, 15651321 - 15651443
Alignment:
Q  70 gtgagccatagttggatgctattctcattttcggatgtcatatttactggtttccattagagatcatactcatggggttgatttttatatttcaggtgaa 169  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  15651321 gtgagccatagttggatgctattctcatttttggatgtcatatttactggtttccattagaggtcatactcatggggttgagttttatatttcaggtgaa 15651420  T
Q  170 acggtacatgattacgcctaccc 192  Q
    || ||||||||||||||||||||    
T  15651421 acagtacatgattacgcctaccc 15651443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 224 - 408
Target Start/End: Original strand, 15627748 - 15627937
Alignment:
Q  224 atagggatttgagctatagccctacacagtctaagttagca------------atgataatgtccctg-ctgcacaagaggctgccacatattctgctca 310  Q
    |||||||||||||||||||||||||||||||||||||||              |||||||||||| || ||||||||||||| |||||||  ||||||||    
T  15627748 atagggatttgagctatagccctacacagtctaagttagacttagaattcgtgatgataatgtccttgtctgcacaagaggcagccacat--tctgctca 15627845  T
Q  311 agcattttctgaagtgaaagccatcctagaggaagttgaagaagcaacagaggaaggctgaggcctcactatactatggtaaaagtttgtgtgaattt 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||| |||||||||    
T  15627846 agcattttctgaagtgaaagccatcctagaggaagttgaagaagcaacagaggaaggct------tcactatactatggtaaaagtttttgtgaattt 15627937  T

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Target: chr8; HSP #7
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 224 - 408
Target Start/End: Original strand, 15651515 - 15651704
Alignment:
Q  224 atagggatttgagctatagccctacacagtctaagttag------------caatgataatgtccctg-ctgcacaagaggctgccacatattctgctca 310  Q
    |||||||||||||||||||||||||||||||||||||||            | |||||||||||| || ||||||||||||| |||||||  ||||||||    
T  15651515 atagggatttgagctatagccctacacagtctaagttagacttagaattcgcgatgataatgtccttgtctgcacaagaggcagccacat--tctgctca 15651612  T
Q  311 agcattttctgaagtgaaagccatcctagaggaagttgaagaagcaacagaggaaggctgaggcctcactatactatggtaaaagtttgtgtgaattt 408  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||| |||||||||    
T  15651613 agtattttctgaagtgaaagccatcctagaggaagttgaagaagcaacagaggaaggct------tcactatactatggtaaaagtttttgtgaattt 15651704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 259 - 364
Target Start/End: Complemental strand, 12064583 - 12064477
Alignment:
Q  259 ttagcaatgataatgtccctg-ctgcacaagaggctgccacatattctgctcaagcattttctgaagtgaaagccatcctagaggaagttgaagaagcaa 357  Q
    ||||||||||||||||||||| || |||||||||| ||||||||| |||||||||||||| |||||||| ||||| | |||||||||| |||||| ||||    
T  12064583 ttagcaatgataatgtccctgtcttcacaagaggcagccacatatgctgctcaagcatttgctgaagtggaagcccttctagaggaagctgaagaggcaa 12064484  T
Q  358 cagagga 364  Q
    |||||||    
T  12064483 cagagga 12064477  T

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Target: chr8; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 379 - 439
Target Start/End: Original strand, 15616412 - 15616472
Alignment:
Q  379 ctatactatggtaaaagtttgtgtgaattttgtttagaaactaaataatattgttgaattt 439  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  15616412 ctatactatggtaaaagtttgtgtgaatttcgtttagaaactaaataatattgttgaattt 15616472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 111 - 192
Target Start/End: Complemental strand, 12064785 - 12064705
Alignment:
Q  111 atttactggtttccattagagatcatactcatggggttgatttttatatttcaggtgaaacggtacatgattacgcctaccc 192  Q
    ||||||||||||| | |||||||||||||||| ||||||| |||||||||| ||||||||| ||||| ||||| ||||||||    
T  12064785 atttactggtttcaaatagagatcatactcat-gggttgagttttatattttaggtgaaacagtacaggattatgcctaccc 12064705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 70 - 191
Target Start/End: Complemental strand, 12068614 - 12068494
Alignment:
Q  70 gtgagccatagttggatgctattctcattttcggatgtcatatttactggtttccattagagatcatactcatggggttgatttttatatttcaggtgaa 169  Q
    |||||| ||| ||| ||||||||||||||||   |||||||||||||| ||||| ||||||||||||| |||| || |||| |||||||||| || ||||    
T  12068614 gtgagctatatttgaatgctattctcatttttcaatgtcatatttactagtttctattagagatcataatcat-ggtttgagttttatatttaagatgaa 12068516  T
Q  170 acggtacatgattacgcctacc 191  Q
    || ||||| ||||  |||||||    
T  12068515 acagtacaggattgtgcctacc 12068494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 70 - 164
Target Start/End: Original strand, 39465058 - 39465152
Alignment:
Q  70 gtgagccatagttggatgctattctcattttcggatgtcatatttac-tggtttccattagagatcatactcatggggttgatttttatatttcag 164  Q
    |||||| ||| |||||||||||||||||||| ||||||||||||||| || |||| |||||||  || |||||| ||||||  |||||||||||||    
T  39465058 gtgagctatatttggatgctattctcatttttggatgtcatatttacatgttttcaattagaggccagactcat-gggttgtgttttatatttcag 39465152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 15997006 - 15996947
Alignment:
Q  111 atttactggtttccattagagatcatactcatggggttgatttttatatttcaggtgaaac 171  Q
    ||||| ||||||| ||| |||||||||||||| ||||||| || |||||||||||||||||    
T  15997006 atttaatggtttcaatttgagatcatactcat-gggttgagttatatatttcaggtgaaac 15996947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 409 - 439
Target Start/End: Original strand, 15627958 - 15627988
Alignment:
Q  409 tgtttagaaactaaataatattgttgaattt 439  Q
    |||||||||||||||||||||||||||||||    
T  15627958 tgtttagaaactaaataatattgttgaattt 15627988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 409 - 439
Target Start/End: Original strand, 15651725 - 15651755
Alignment:
Q  409 tgtttagaaactaaataatattgttgaattt 439  Q
    |||||||||||||||||||||||||||||||    
T  15651725 tgtttagaaactaaataatattgttgaattt 15651755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 81 - 170
Target Start/End: Complemental strand, 39404285 - 39404197
Alignment:
Q  81 ttggatgctattctcattttcggatgtcatatttactggtttccattagagatcatactcatggggttgatttttatatttcaggtgaaa 170  Q
    ||||||||||||||||||||   |||||||||||||||||||| |||| ||||||||||||| ||||||| |||||||||||||||||||    
T  39404285 ttggatgctattctcatttttatatgtcatatttactggtttcaattacagatcatactcat-gggttgagttttatatttcaggtgaaa 39404197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 262
Target Start/End: Complemental strand, 39404103 - 39404067
Alignment:
Q  226 agggatttgagctatagccctacacagtctaagttag 262  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  39404103 agggatttgagctatagccccacacagtctgagttag 39404067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 70 - 164
Target Start/End: Complemental strand, 23443 - 23349
Alignment:
Q  70 gtgagccatagttggatgctattctcattttcggatgtcatatttac-tggtttccattagagatcatactcatggggttgatttttatatttcag 164  Q
    |||||| ||| |||||||||||||||||||| ||||||||||||||| || |||| |||||||  || |||||| ||||||  |||||||||||||    
T  23443 gtgagctatatttggatgctattctcatttttggatgtcatatttacatgttttcaattagaggccagactcat-gggttgtgttttatatttcag 23349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 117
Target Start/End: Original strand, 12082356 - 12082403
Alignment:
Q  70 gtgagccatagttggatgctattctcattttcggatgtcatatttact 117  Q
    |||||| ||| |||||||||||||||||||| ||||||||| ||||||    
T  12082356 gtgagctatatttggatgctattctcatttttggatgtcatgtttact 12082403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 134
Target Start/End: Original strand, 20149841 - 20149903
Alignment:
Q  72 gagccatagttggatgctattctcattttcggatgtcatatttactggtttccattagagatc 134  Q
    |||| ||| |||||||||||| |||  || |||||||||||||||| ||||| ||||||||||    
T  20149841 gagctatatttggatgctattttcacatttggatgtcatatttacttgtttcaattagagatc 20149903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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