View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17518_low_12 (Length: 412)
Name: NF17518_low_12
Description: NF17518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17518_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 335; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 1890765 - 1891156
Alignment:
| Q |
1 |
agccacacttcaagggatgaacaatcatgtctttgttgcctatgcttatgctattggtactgctattctccttcctatcacnnnnnnnagaagaaggtaa |
100 |
Q |
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| T |
1890765 |
agccacacttcaagggatgaacaatcatgtctttgttgcctatgcttatgctattggtactgctattctccttcctatcactttttttagaagaaggtaa |
1890864 |
T |
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| Q |
101 |
gtttgtcagaatcacggtgttagaacaacatatgtatataacaacttagtacatgtttagattgacggtaaatttgtcaggttcatcacactgtaccatc |
200 |
Q |
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| T |
1890865 |
gtttgtcagaatcacggtgttagaacaacatatgtatacaacaacttagtacatgtttagattgacggtaaatttgtcaggttcatcacactgtaccatc |
1890964 |
T |
|
| Q |
201 |
gagattttgacaaaaaacagttttggaaactgatcgtcatttcaaacttacacttagcaattacatttcacttaacaaaagttatagtgccttcgtgatt |
300 |
Q |
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| T |
1890965 |
aagattttgacaaaaaacagttttggaaactcatcgtgatttgaaacttacacttagcaattacatttcacttaacaaaagttacagtatcttcgtgatt |
1891064 |
T |
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| Q |
301 |
ttgtcaaactataagcgatttcaaacacgcacttagtatttatacagactaatttcttcttgttttttcttatgatgtctgtttgcagattg |
392 |
Q |
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| T |
1891065 |
ttgtcaaactatatgcgatttcaaacacgcacttagtatttatacagactaatttcttcttgttttttcttatgatgtctgtttgcagattg |
1891156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 5 - 125
Target Start/End: Original strand, 1884125 - 1884245
Alignment:
| Q |
5 |
acacttcaagggatgaacaatcatgtctttgttgcctatgcttatgctattggtactgctattctccttcctatcacnnnnnnnagaagaaggtaagttt |
104 |
Q |
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| T |
1884125 |
acacttcaagggatgaacaatcatgtctttgttgcctatgcttatgctgttgcaacttcttttctccttcctatcactttttttagaagaaggtaagttt |
1884224 |
T |
|
| Q |
105 |
gtcagaatcacggtgttagaa |
125 |
Q |
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| T |
1884225 |
gacagaatcacgacgttagaa |
1884245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 1878109 - 1878189
Alignment:
| Q |
1 |
agccacacttcaagggatgaacaatcatgtctttgttgcctatgcttatgctattggtactgctattctccttcctatcac |
81 |
Q |
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|||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||| || |||||||||||||||| |
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| T |
1878109 |
agccacacttcaagggatgaacaactatgtttttgttgcctatgcttatgctgttggtacttctgttctccttcctatcac |
1878189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 1911075 - 1911131
Alignment:
| Q |
5 |
acacttcaagggatgaacaatcatgtctttgttgcctatgcttatgctattggtact |
61 |
Q |
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|||||||||||||||||||||||||||||| |||| |||||||||||| |||||||| |
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| T |
1911075 |
acacttcaagggatgaacaatcatgtctttattgcttatgcttatgctgttggtact |
1911131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 1895615 - 1895695
Alignment:
| Q |
1 |
agccacacttcaagggatgaacaatcatgtctttgttgcctatgcttatgctattggtactgctattctccttcctatcac |
81 |
Q |
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||||||| ||||||||||||||| |||||||||||||| ||| |||||||| |||||||| || |||| |||||| |||| |
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| T |
1895615 |
agccacaaatcaagggatgaacaaccatgtctttgttgcttattcttatgctgttggtacttctgttcttcttcctgtcac |
1895695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 1902030 - 1902083
Alignment:
| Q |
5 |
acacttcaagggatgaacaatcatgtctttgttgcctatgcttatgctattggt |
58 |
Q |
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|||||||||||||||||||| ||||||||| |||| |||||||||||| ||||| |
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| T |
1902030 |
acacttcaagggatgaacaaccatgtctttattgcttatgcttatgctgttggt |
1902083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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