View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17518_low_13 (Length: 396)

Name: NF17518_low_13
Description: NF17518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17518_low_13
NF17518_low_13
[»] chr4 (28 HSPs)
chr4 (1-386)||(48875701-48876086)
chr4 (1-386)||(48870397-48870782)
chr4 (1-386)||(48886083-48886468)
chr4 (1-109)||(50250902-50251010)
chr4 (1-109)||(7877581-7877689)
chr4 (54-109)||(37827106-37827161)
chr4 (17-109)||(48705471-48705565)
chr4 (3-109)||(45366324-45366436)
chr4 (1-106)||(45372184-45372289)
chr4 (143-263)||(48735352-48735466)
chr4 (143-191)||(48898701-48898749)
chr4 (3-107)||(48902795-48902899)
chr4 (5-109)||(50668911-50669015)
chr4 (20-106)||(48170695-48170781)
chr4 (59-105)||(48852576-48852622)
chr4 (60-106)||(48891326-48891372)
chr4 (143-188)||(48147756-48147801)
chr4 (317-386)||(48705212-48705281)
chr4 (57-106)||(48898630-48898679)
chr4 (60-97)||(50672412-50672449)
chr4 (1-109)||(7773938-7774046)
chr4 (59-107)||(49044310-49044358)
chr4 (54-109)||(7237832-7237887)
chr4 (20-106)||(47207770-47207856)
chr4 (143-188)||(48156460-48156505)
chr4 (143-188)||(48170601-48170646)
chr4 (210-263)||(48705329-48705382)
chr4 (221-278)||(48852753-48852810)
[»] chr3 (4 HSPs)
chr3 (1-109)||(47452019-47452127)
chr3 (1-97)||(11015643-11015739)
chr3 (141-186)||(11015557-11015602)
chr3 (222-266)||(11005890-11005934)
[»] chr5 (3 HSPs)
chr5 (4-106)||(42562446-42562548)
chr5 (6-97)||(29696072-29696163)
chr5 (46-96)||(29688011-29688061)
[»] chr8 (5 HSPs)
chr8 (1-94)||(12195152-12195245)
chr8 (1-94)||(12439580-12439673)
chr8 (1-86)||(15348717-15348802)
chr8 (1-109)||(12200159-12200267)
chr8 (1-109)||(12444587-12444695)
[»] chr7 (2 HSPs)
chr7 (3-110)||(48883655-48883762)
chr7 (54-98)||(30120434-30120478)
[»] chr6 (2 HSPs)
chr6 (5-106)||(21979765-21979866)
chr6 (54-106)||(21015714-21015766)
[»] chr1 (1 HSPs)
chr1 (10-97)||(24310047-24310134)


Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 48875701 - 48876086
Alignment:
Q  1 tgaaattaaaggttcttgcagaggctttatactgttgcattgtttttcaagcctctacctatggaatccatccacaggatttcacaaacaaatacctatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  48875701 tgaaattaaaggttcttgcagaggctttatactgttgcattgtttttcaagcctctacctatggaatccatccaccggatttcacaaacaaatacctatg 48875800  T
Q  101 tctcctttttggtcagaagtagatgatgacgatgaaaagatgtatggttttgggtatgatcaattagcagatgattacttggtggttttatcattctccc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  48875801 tctcctttttggtcagaagtagatgatgacgatgaaaagatgtatggttttgggtatgatcagttagcagatgattacttggtggttttatcattctccc 48875900  T
Q  201 cttatatggcatcacgctttgagtttttctcattgagagccaatacctggatacaaattgagtgtcctcacttcccttttagtaatgcctttgatgagaa 300  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  48875901 cttatatggcatcacgcttcgagtttttctcattgagagccaatacctggatacaaattgagtgtcctcactccccttttagtaatgcctttgatgagaa 48876000  T
Q  301 gtgcggtgtaggttccctctatcacggggctattcattggttggcttatggtgatgatttacaaaagagtgttatccttgcctttg 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  48876001 gtgcggtgtaggttccctctatcacggggctattcattggttggcttatcgtgatgatttacaaaagaatgttatccttgcctttg 48876086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 48870397 - 48870782
Alignment:
Q  1 tgaaattaaaggttcttgcagaggctttatactgttgcattgtttttcaagcctctacctatggaatccatccacaggatttcacaaacaaatacctatg 100  Q
    ||||||||||||||| || |||||||||||| | |||||||||  | ||| |||||||||||||||||||||||| ||||||||||||||||||||| ||    
T  48870397 tgaaattaaaggttcatgtagaggctttatattattgcattgtgctccaaccctctacctatggaatccatccaccggatttcacaaacaaatacctttg 48870496  T
Q  101 tctcctttttggtcagaagtagatgatgacgatgaaaagatgtatggttttgggtatgatcaattagcagatgattacttggtggttttatcattctccc 200  Q
    | ||||| ||||| ||||| ||||||||| ||||||| | | |||||||||||||||||||| ||| ||||||||||||| |||||||||||||||| ||    
T  48870497 tgtccttcttggttagaagaagatgatgatgatgaaaggttatatggttttgggtatgatcagttaacagatgattacttagtggttttatcattcttcc 48870596  T
Q  201 cttatatggcatcacgctttgagtttttctcattgagagccaatacctggatacaaattgagtgtcctcacttcccttttagtaatgcctttgatgagaa 300  Q
    |||||||  |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| || ||  |||||||   |||| | ||||||| ||    
T  48870597 cttatatttcatcacacttcgagtttttctcattgagagccaatacctggatacaaattgagtgtactgacagcccttttgcgaatggcattgatgataa 48870696  T
Q  301 gtgcggtgtaggttccctctatcacggggctattcattggttggcttatggtgatgatttacaaaagagtgttatccttgcctttg 386  Q
    |  | | ||||||||||||||| | |||||||||||||||||||||||| ||| || ||||  ||||| |||||||||||||||||    
T  48870697 gcccagcgtaggttccctctataatggggctattcattggttggcttatcgtgctggtttaggaaagaatgttatccttgcctttg 48870782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 48886083 - 48886468
Alignment:
Q  1 tgaaattaaaggttcttgcagaggctttatactgttgcattgtttttcaagcctctacctatggaatccatccacaggatttcacaaacaaatacctatg 100  Q
    ||||||||||||||| || |||||||||||| | |||||||||  | ||| |||||||||||||||||||||||| ||||||||||||||||||||| ||    
T  48886083 tgaaattaaaggttcatgtagaggctttatattattgcattgtgctccaaccctctacctatggaatccatccaccggatttcacaaacaaatacctttg 48886182  T
Q  101 tctcctttttggtcagaagtagatgatgacgatgaaaagatgtatggttttgggtatgatcaattagcagatgattacttggtggttttatcattctccc 200  Q
    | ||||| ||||| ||||| ||||||||| ||||||| | | |||||||||||||||||||| ||| ||||||||||||| |||||||||||||||| ||    
T  48886183 tgtccttcttggttagaagaagatgatgatgatgaaaggttatatggttttgggtatgatcagttaacagatgattacttagtggttttatcattcttcc 48886282  T
Q  201 cttatatggcatcacgctttgagtttttctcattgagagccaatacctggatacaaattgagtgtcctcacttcccttttagtaatgcctttgatgagaa 300  Q
    |||||||  |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| || ||  |||||||   |||| | ||||||| ||    
T  48886283 cttatatttcatcacacttcgagtttttctcattgagagccaatacctggatacaaattgagtgtactgacagcccttttgcgaatggcattgatgataa 48886382  T
Q  301 gtgcggtgtaggttccctctatcacggggctattcattggttggcttatggtgatgatttacaaaagagtgttatccttgcctttg 386  Q
    |  | | ||||||||||||||| | |||||||||||||||||||||||| ||| || ||||  ||||| |||||||||||||||||    
T  48886383 gcccagcgtaggttccctctataatggggctattcattggttggcttatcgtgctggtttaggaaagaatgttatccttgcctttg 48886468  T

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Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 50251010 - 50250902
Alignment:
Q  1 tgaaattaaaggttcttgcagaggctttatactgttgcattgtttttcaagcctctacctatggaatccatccacaggatttcacaaacaaatacctatg 100  Q
    ||||||||||||||| || ||||| |||||| | || || ||||||||||||||||||||||||||||||||||| ||  |||||| |||||||||| ||    
T  50251010 tgaaattaaaggttcatgtagaggatttatatttttccactgtttttcaagcctctacctatggaatccatccaccgggcttcacatacaaatacctttg 50250911  T
Q  101 tctcctttt 109  Q
    |||| ||||    
T  50250910 tctcatttt 50250902  T

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Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 7877581 - 7877689
Alignment:
Q  1 tgaaattaaaggttcttgcagaggctttatactgttgcattgtttttcaagcctctacctatggaatccatccacaggatttcacaaacaaatacctatg 100  Q
    |||||||| |||||| |||||||| |||||||| ||| | |||  | ||| | ||||| |||||||||||||||| |||||| | |||||||||||| ||    
T  7877581 tgaaattagaggttcatgcagagggtttatacttttgtactgtcatccaatcatctacatatggaatccatccactggatttaaaaaacaaatacctgtg 7877680  T
Q  101 tctcctttt 109  Q
    |||||||||    
T  7877681 tctcctttt 7877689  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 109
Target Start/End: Complemental strand, 37827161 - 37827106
Alignment:
Q  54 tctacctatggaatccatccacaggatttcacaaacaaatacctatgtctcctttt 109  Q
    ||||| |||||||||||||||| ||||||||||||||||||||  |||||||||||    
T  37827161 tctacatatggaatccatccactggatttcacaaacaaatacccttgtctcctttt 37827106  T

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Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 48705565 - 48705471
Alignment:
Q  17 tgcagaggctttatactgttgcattgtttttcaagcctct--acctatggaatccatccacaggatttcacaaacaaatacctatgtctcctttt 109  Q
    |||||||| |||||| |||| ||||||  ||||| |||||  |||| ||||||||||| || ||||||||||||||||||||| |||| ||||||    
T  48705565 tgcagaggttttatattgtttcattgtgcttcaaccctctctacctgtggaatccatctactggatttcacaaacaaatacctttgtcacctttt 48705471  T

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Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 109
Target Start/End: Complemental strand, 45366436 - 45366324
Alignment:
Q  3 aaattaaaggttcttgcagaggctttatactgttgcattgtttttcaa------gcctctacctatggaatccatccacaggatttcacaaacaaatacc 96  Q
    ||||||||||||| || |||||||||||||| ||||| |||| || ||      |||| ||||| |||||||||||||| |||||||| ||| |||||||    
T  45366436 aaattaaaggttcatgtagaggctttatacttttgcactgttctttaactttaagcctttacctttggaatccatccactggatttcataaaaaaatacc 45366337  T
Q  97 tatgtctcctttt 109  Q
    | || ||||||||    
T  45366336 tttgcctcctttt 45366324  T

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Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 45372289 - 45372184
Alignment:
Q  1 tgaaattaaaggttcttgcagaggctttatactgttgcattgtttttcaagcctctacctatggaatccatccacaggatttcacaaacaaatacctatg 100  Q
    ||||||||||||||| || ||||| |||||| | |||||| ||  ||||| | |||| ||||||||||||||||| ||  |||| |||||||||||| |     
T  45372289 tgaaattaaaggttcatgtagagggtttatatttttgcatggtaattcaaccttctatctatggaatccatccactggtgttcagaaacaaatacctttt 45372190  T
Q  101 tctcct 106  Q
    ||||||    
T  45372189 tctcct 45372184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 143 - 263
Target Start/End: Complemental strand, 48735466 - 48735352
Alignment:
Q  143 tatggttttgggtatgatcaattagcagatgattacttggtggttttatcattctccccttatatggcatcacgctttgagtttttctcattgagagcca 242  Q
    ||||||||||||||||| || ||| |||||||||||||||||||||   || |||||    ||    ||| || |||||||||||||||||||||||| |    
T  48735466 tatggttttgggtatgaccatttaacagatgattacttggtggttt---caatctccgtccatc---cattacactttgagtttttctcattgagagcta 48735373  T
Q  243 atacctggatacaaattgagt 263  Q
    ||||||||| | |||||||||    
T  48735372 atacctggaaagaaattgagt 48735352  T

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Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 143 - 191
Target Start/End: Original strand, 48898701 - 48898749
Alignment:
Q  143 tatggttttgggtatgatcaattagcagatgattacttggtggttttat 191  Q
    |||||||||||||||||||| ||| ||||||||||||| ||||||||||    
T  48898701 tatggttttgggtatgatcagttaacagatgattacttagtggttttat 48898749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 107
Target Start/End: Original strand, 48902795 - 48902899
Alignment:
Q  3 aaattaaaggttcttgcagaggctttatactgttgcattgtttttcaagcctctacctatggaatccatccacaggatttcacaaacaaatacctatgtc 102  Q
    |||||| |||||| |||||||| ||| |||| ||||| |||| ||  | | ||||  |||||||||| ||||| ||||||||||||| ||||||| ||||    
T  48902795 aaattataggttcatgcagagggtttgtacttttgcactgttctttcaccatctatttatggaatccttccactggatttcacaaacgaatacctttgtc 48902894  T
Q  103 tcctt 107  Q
    |||||    
T  48902895 tcctt 48902899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 5 - 109
Target Start/End: Original strand, 50668911 - 50669015
Alignment:
Q  5 attaaaggttcttgcagaggctttatactgttgcattgtttttcaagcctctacctatggaatccatccacaggatttcacaaacaaatacctatgtctc 104  Q
    |||| |||||| || |||||||||||| | |||||||||| ||| | | ||| | ||||||||||||||||  ||||||| ||||| |||||  ||||||    
T  50668911 attagaggttcgtgtagaggctttatatttttgcattgttcttccaacatctgcatatggaatccatccaccagatttcataaacagataccattgtctc 50669010  T
Q  105 ctttt 109  Q
    |||||    
T  50669011 ctttt 50669015  T

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Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 48170781 - 48170695
Alignment:
Q  20 agaggctttatactgttgcattgtttttcaagcctctacctatggaatccatccacaggatttcacaaacaaatacctatgtctcct 106  Q
    |||||||||||| | ||||||  |  ||||||  ||||||||||||||||||||||  || |||| |||||||||||| ||||||||    
T  48170781 agaggctttatatttttgcatcataattcaagtttctacctatggaatccatccacccgagttcataaacaaatacctttgtctcct 48170695  T

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Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 48852576 - 48852622
Alignment:
Q  59 ctatggaatccatccacaggatttcacaaacaaatacctatgtctcc 105  Q
    ||||||||||||||||| ||| ||||||||||||||||| |||||||    
T  48852576 ctatggaatccatccaccggagttcacaaacaaatacctttgtctcc 48852622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 106
Target Start/End: Original strand, 48891326 - 48891372
Alignment:
Q  60 tatggaatccatccacaggatttcacaaacaaatacctatgtctcct 106  Q
    |||||||||||||||| ||| ||||||||||||||||| ||||||||    
T  48891326 tatggaatccatccactggacttcacaaacaaatacctttgtctcct 48891372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 48147801 - 48147756
Alignment:
Q  143 tatggttttgggtatgatcaattagcagatgattacttggtggttt 188  Q
    ||||||||||||||||| || ||| |||||||||||||||||||||    
T  48147801 tatggttttgggtatgaccagttaacagatgattacttggtggttt 48147756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 317 - 386
Target Start/End: Complemental strand, 48705281 - 48705212
Alignment:
Q  317 ctctatcacggggctattcattggttggcttatggtgatgatttacaaaagagtgttatccttgcctttg 386  Q
    |||||| | |||||||||||||||||||||||| || ||||||||| ||||  ||||||  |||||||||    
T  48705281 ctctataatggggctattcattggttggcttatcgtcatgatttacgaaaggatgttattgttgcctttg 48705212  T

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Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 48898630 - 48898679
Alignment:
Q  57 acctatggaatccatccacaggatttcacaaacaaatacctatgtctcct 106  Q
    ||||||||||||||||||| |||  |||||||||||||||| ||||||||    
T  48898630 acctatggaatccatccaccggagctcacaaacaaatacctttgtctcct 48898679  T

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Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 60 - 97
Target Start/End: Original strand, 50672412 - 50672449
Alignment:
Q  60 tatggaatccatccacaggatttcacaaacaaatacct 97  Q
    |||||||||||||||||||| |||||||||||||||||    
T  50672412 tatggaatccatccacaggagttcacaaacaaatacct 50672449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 7774046 - 7773938
Alignment:
Q  1 tgaaattaaaggttcttgcagaggctttatactgttgcattgtttttcaagcctctacctatggaatccatccacaggatttcacaaacaaatacctatg 100  Q
    |||||||| |||||| || ||||| |||||||| ||| || ||    ||| | ||||| |||||||||||||||| |||||| | ||||||||||||  |    
T  7774046 tgaaattagaggttcgtgtagagggtttatacttttgtatcgtgacccaaacatctacatatggaatccatccactggatttaaaaaacaaatacctggg 7773947  T
Q  101 tctcctttt 109  Q
    |||||||||    
T  7773946 tctcctttt 7773938  T

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Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 49044358 - 49044310
Alignment:
Q  59 ctatggaatccatccacaggatttcacaaacaaatacctatgtctcctt 107  Q
    |||||||||||||||||  || ||||||||||||||||| |||||||||    
T  49044358 ctatggaatccatccactagagttcacaaacaaatacctttgtctcctt 49044310  T

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Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 54 - 109
Target Start/End: Complemental strand, 7237887 - 7237832
Alignment:
Q  54 tctacctatggaatccatccacaggatttcacaaacaaatacctatgtctcctttt 109  Q
    ||||| |||||||||||||||| |||||| | |||||||||||  |||||||||||    
T  7237887 tctacgtatggaatccatccactggatttaaaaaacaaatacccgtgtctcctttt 7237832  T

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Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 47207770 - 47207856
Alignment:
Q  20 agaggctttatactgttgcattgtttttcaagcctctacctatggaatccatccacaggatttcacaaacaaatacctatgtctcct 106  Q
    |||||||||||| | |||||| |  ||||||||  ||||||||||||||||||||| ||| || | | |||||||||| | ||||||    
T  47207770 agaggctttatatttttgcatcgactttcaagctactacctatggaatccatccactggagttgagagacaaatacctctctctcct 47207856  T

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Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 48156505 - 48156460
Alignment:
Q  143 tatggttttgggtatgatcaattagcagatgattacttggtggttt 188  Q
    ||||| ||||||||||||||||||  ||||||||||||||| ||||    
T  48156505 tatggatttgggtatgatcaattaagagatgattacttggtagttt 48156460  T

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Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 48170646 - 48170601
Alignment:
Q  143 tatggttttgggtatgatcaattagcagatgattacttggtggttt 188  Q
    |||||||||||||||||||| |||  |||||||||||| |||||||    
T  48170646 tatggttttgggtatgatcagttaagagatgattacttagtggttt 48170601  T

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Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 263
Target Start/End: Complemental strand, 48705382 - 48705329
Alignment:
Q  210 catcacgctttgagtttttctcattgagagccaatacctggatacaaattgagt 263  Q
    |||||| |||||||||||||||||||||||  ||||| |||| | |||||||||    
T  48705382 catcacactttgagtttttctcattgagagttaatacatggaaagaaattgagt 48705329  T

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Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 278
Target Start/End: Original strand, 48852753 - 48852810
Alignment:
Q  221 gagtttttctcattgagagccaatacctggatacaaattgagtgtcctcacttccctt 278  Q
    |||||||||||||||||||| ||| | |||| | |||||||| || ||||||||||||    
T  48852753 gagtttttctcattgagagctaatgcatggaaagaaattgagggtactcacttccctt 48852810  T

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Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 47452127 - 47452019
Alignment:
Q  1 tgaaattaaaggttcttgcagaggctttatactgttgcattgtttttcaagcctctacctatggaatccatccacaggatttcacaaacaaatacctatg 100  Q
    ||||||||||||||| || ||||| |||||||| ||   ||||| ||||| | ||||| |||||||||||||||| ||| ||||||||||||||||| ||    
T  47452127 tgaaattaaaggttcatgtagagggtttatacttttaagttgttcttcaaacatctacatatggaatccatccactggagttcacaaacaaatacctttg 47452028  T
Q  101 tctcctttt 109  Q
     ||||||||    
T  47452027 cctcctttt 47452019  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 11015739 - 11015643
Alignment:
Q  1 tgaaattaaaggttcttgcagaggctttatactgttgcattgtttttcaagcctctacctatggaatccatccacaggatttcacaaacaaatacct 97  Q
    |||||||||| |||| || ||||| |||||| | |||  ||||| ||||| | ||||||||||||||||||| || |||  ||||||||||||||||    
T  11015739 tgaaattaaaagttcatgtagaggatttatagttttgacttgttcttcaaacatctacctatggaatccatcaactggacatcacaaacaaatacct 11015643  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 186
Target Start/End: Complemental strand, 11015602 - 11015557
Alignment:
Q  141 tgtatggttttgggtatgatcaattagcagatgattacttggtggt 186  Q
    ||||||||||||||||||| || |||  ||||||||||||||||||    
T  11015602 tgtatggttttgggtatgaccatttaagagatgattacttggtggt 11015557  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 266
Target Start/End: Complemental strand, 11005934 - 11005890
Alignment:
Q  222 agtttttctcattgagagccaatacctggatacaaattgagtgtc 266  Q
    ||||||||||||||||||| ||||| |||| | ||||||||||||    
T  11005934 agtttttctcattgagagcgaatacatggaaagaaattgagtgtc 11005890  T

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Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 4 - 106
Target Start/End: Complemental strand, 42562548 - 42562446
Alignment:
Q  4 aattaaaggttcttgcagaggctttatactgttgcattgtttttcaagcctctacctatggaatccatccacaggatttcacaaacaaatacctatgtct 103  Q
    |||||||||||| || ||||| |||||||| |||||||||  | || || |||||||||||||||||||||  |||  |||||||||||||||| |||||    
T  42562548 aattaaaggttcgtgtagagggtttatacttttgcattgtggtgcatgcttctacctatggaatccatccatcggacatcacaaacaaatacctttgtct 42562449  T
Q  104 cct 106  Q
    |||    
T  42562448 cct 42562446  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 6 - 97
Target Start/End: Original strand, 29696072 - 29696163
Alignment:
Q  6 ttaaaggttcttgcagaggctttatactgttgcattgtttttcaagcctctacctatggaatccatccacaggatttcacaaacaaatacct 97  Q
    |||||||||| || |||||||||||||| ||| | ||||  ||||||||||   |||||||||||||||| ||||||||||||| |||||||    
T  29696072 ttaaaggttcgtgtagaggctttatacttttgaactgttactcaagcctctgtatatggaatccatccaccggatttcacaaacgaatacct 29696163  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 96
Target Start/End: Original strand, 29688011 - 29688061
Alignment:
Q  46 ttcaagcctctacctatggaatccatccacaggatttcacaaacaaatacc 96  Q
    ||||||||| || ||||||||||||||||| ||| |||||| |||||||||    
T  29688011 ttcaagcctttatctatggaatccatccaccggagttcacagacaaatacc 29688061  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 12195152 - 12195245
Alignment:
Q  1 tgaaattaaaggttcttgcagaggctttatactgttgcattgtttttcaagcctctacctatggaatccatccacaggatttcacaaacaaata 94  Q
    ||||||||||||||| |||||||| |||||| | ||| |||||||  ||| ||||||| |||||||||||||| |  ||||||||||| |||||    
T  12195152 tgaaattaaaggttcgtgcagagggtttatattattgaattgtttgacaaacctctacgtatggaatccatcctctagatttcacaaagaaata 12195245  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 12439580 - 12439673
Alignment:
Q  1 tgaaattaaaggttcttgcagaggctttatactgttgcattgtttttcaagcctctacctatggaatccatccacaggatttcacaaacaaata 94  Q
    ||||||||||||||| |||||||| |||||| | ||| |||||||  ||| ||||||| |||||||||||||| |  ||||||||||| |||||    
T  12439580 tgaaattaaaggttcgtgcagagggtttatattattgaattgtttgacaaacctctacgtatggaatccatcctctagatttcacaaagaaata 12439673  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 15348717 - 15348802
Alignment:
Q  1 tgaaattaaaggttcttgcagaggctttatactgttgcattgtttttcaagcctctacctatggaatccatccacaggatttcaca 86  Q
    ||||||||||||||| || ||||||||| |||| ||| | | || ||||| |||||| ||||||||||||||||| ||||||||||    
T  15348717 tgaaattaaaggttcatgtagaggctttgtacttttgaactattattcaatcctctatctatggaatccatccaccggatttcaca 15348802  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 12200159 - 12200267
Alignment:
Q  1 tgaaattaaaggttcttgcagaggctttatactgttgcattgtttttcaagcctctacctatggaatccatccacaggatttcacaaacaaatacctatg 100  Q
    ||||||||||||||| |||||||| |||||| | ||||| ||||   |||   ||||| |||||||||||||| |  | ||||||||| |||||||| ||    
T  12200159 tgaaattaaaggttcatgcagagggtttatattcttgcactgttggacaaatatctacgtatggaatccatcctctaggtttcacaaaaaaatacctttg 12200258  T
Q  101 tctcctttt 109  Q
    |||||||||    
T  12200259 tctcctttt 12200267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 12444587 - 12444695
Alignment:
Q  1 tgaaattaaaggttcttgcagaggctttatactgttgcattgtttttcaagcctctacctatggaatccatccacaggatttcacaaacaaatacctatg 100  Q
    ||||||||||||||| |||||||| |||||| | ||||| ||||   |||   ||||| |||||||||||||| |  | ||||||||| |||||||| ||    
T  12444587 tgaaattaaaggttcatgcagagggtttatattcttgcactgttggacaaatatctacgtatggaatccatcctctaggtttcacaaaaaaatacctttg 12444686  T
Q  101 tctcctttt 109  Q
    |||||||||    
T  12444687 tctcctttt 12444695  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 110
Target Start/End: Original strand, 48883655 - 48883762
Alignment:
Q  3 aaattaaaggttcttgcagaggctttatactgttgcattgtttttcaagcctctacctatggaatccatccacaggatttcacaaacaaatacctatgtc 102  Q
    ||||||||||||| || ||||| ||| |  | |||||| ||| ||| | | ||| | |||||||||||| ||| ||||||||||||||||||||| ||||    
T  48883655 aaattaaaggttcgtgtagagggtttctgtttttgcatggttcttccaacatctgcatatggaatccatacactggatttcacaaacaaatacctttgtc 48883754  T
Q  103 tccttttt 110  Q
    ||||||||    
T  48883755 tccttttt 48883762  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 30120478 - 30120434
Alignment:
Q  54 tctacctatggaatccatccacaggatttcacaaacaaataccta 98  Q
    |||| ||||||||||||||||| ||| | ||||||||||||||||    
T  30120478 tctatctatggaatccatccaccggagtccacaaacaaataccta 30120434  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 106
Target Start/End: Complemental strand, 21979866 - 21979765
Alignment:
Q  5 attaaaggttcttgcagaggctttatactgttgcattgtttttcaagcctctacctatggaatccatccacaggatttcacaaacaaatacctatgtctc 104  Q
    ||||||||||| || ||||| |||||| | || || ||||||||||| |||||| ||||||| || || || ||| |||| |||||||||||| ||||||    
T  21979866 attaaaggttcatgtagaggatttatatttttccactgtttttcaagactctacatatggaacccgtctactggacttcaaaaacaaatacctttgtctc 21979767  T
Q  105 ct 106  Q
    ||    
T  21979766 ct 21979765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 21015714 - 21015766
Alignment:
Q  54 tctacctatggaatccatccacaggatttcacaaacaaatacctatgtctcct 106  Q
    ||||||||||||||||||||||  || ||||||||||||||||| ||||||||    
T  21015714 tctacctatggaatccatccactagagttcacaaacaaatacctttgtctcct 21015766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 10 - 97
Target Start/End: Original strand, 24310047 - 24310134
Alignment:
Q  10 aggttcttgcagaggctttatactgttgcattgtttttcaagcctctacctatggaatccatccacaggatttcacaaacaaatacct 97  Q
    |||||| || ||||| |||||| ||||| | |||||||||| | | ||| |||||||||||||||| ||| |||| | ||||||||||    
T  24310047 aggttcatgtagaggttttatattgttggagtgtttttcaaacatttacgtatggaatccatccaccggagttcatagacaaatacct 24310134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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