View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17518_low_14 (Length: 379)
Name: NF17518_low_14
Description: NF17518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17518_low_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 9 - 363
Target Start/End: Original strand, 43607504 - 43607858
Alignment:
| Q |
9 |
gaaatgaaggtcacaaacataagatatgccgtcagaatggctcacctaaatacatatctgtgtaaccctacaagaaattgtagaatatgggtaatacctg |
108 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43607504 |
gaaatgaaggtcacaaacataagacatgccgtcagaatggctcacctaaatacatatctgtgtaaccctacaagaaattgtagaatatgggtaatacctg |
43607603 |
T |
|
| Q |
109 |
caggactgatcgtgagaaaagtatggaaatggaagtttttaacattttccaaggatcatttctgcagtatttccttgttgccggtctccatgtatcacta |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
43607604 |
caggactgatcgtgagaaaagtatggaaatggaagtttttaacattttccaaggatcatttctgcagtatttccttgttgcaggtctccatgtatcacta |
43607703 |
T |
|
| Q |
209 |
agcgatatccttgacaaaaaagtaggcctggatggagaataccaatgatcggtcatgtcaaacggtgatgcttcaaccaaactacactatactagcaatg |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43607704 |
agcgatatccttgacaaaaaagtaggcctggatggagaataccaatgatcggtcatgtcaaacggtgatgcttcaaccaaactacactatactagcaatg |
43607803 |
T |
|
| Q |
309 |
taaacatgaaatcaacacatatttgtaatttggatatatttgatcactcccggtg |
363 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43607804 |
ttaacatgaaatcaacacatatttgtaatttggatatatttgatcactcccggtg |
43607858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University