View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17518_low_18 (Length: 331)
Name: NF17518_low_18
Description: NF17518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17518_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 13 - 315
Target Start/End: Complemental strand, 29523605 - 29523301
Alignment:
| Q |
13 |
attattctgatgttagcatagaataagattaccgtattttcctttaagacatgaattatatcttcaggcaacca--gtctactacatttcccaggctctg |
110 |
Q |
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| T |
29523605 |
attattttgatgttagtatacagtaagattaccgtattttcctttaagacatgaattatatcttcaggcaaccatagtctactacatttcccaggctctg |
29523506 |
T |
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| Q |
111 |
ttggtgattcttgacaaacaagttctttagccattttctcgattaagtcttgtattatcaccttaccatcgcaaatacttatcatagattcataaatcaa |
210 |
Q |
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| T |
29523505 |
ttggtgattctcgacgaacaagttctttagccattttctcgatcaagtggtgtattatcaccttaccatcactgatacttatcatagattcataaatcaa |
29523406 |
T |
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| Q |
211 |
aagttcagtttgatgcttcacattgtacccatgatgagcacaaagtatattttggacctctgtcaacccatatcctttgaagcaacaaacaatatcgaga |
310 |
Q |
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| T |
29523405 |
aacttcagtgtgatgcttcacattgtaaccatgatgagcgcgaagtatattttggacctctgtcaactcatatcctttgaagcaacaaacaatatcgaga |
29523306 |
T |
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| Q |
311 |
aaaat |
315 |
Q |
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||||| |
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| T |
29523305 |
aaaat |
29523301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 227 - 314
Target Start/End: Complemental strand, 29473922 - 29473835
Alignment:
| Q |
227 |
ttcacattgtacccatgatgagcacaaagtatattttggacctctgtcaacccatatcctttgaagcaacaaacaatatcgagaaaaa |
314 |
Q |
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| T |
29473922 |
ttcacattgtaactatgatgagtacaaagtgtattttggacttttatcgactcatatcctttgaagcaacaaacaatatccagaaaaa |
29473835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 168
Target Start/End: Complemental strand, 29474080 - 29473957
Alignment:
| Q |
47 |
tattttcctttaagacatgaattatatcttcaggcaaccagt--ctactacatttcccaggctctgttggtgattcttgacaaacaagttctttagccat |
144 |
Q |
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| T |
29474080 |
tattttccattaagacataaattgtatcctcaagcaaccataacctaccacatttcccagactccatgggtgattctcgatgaacaagttctttagccat |
29473981 |
T |
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| Q |
145 |
tttctcgattaagtcttgtattat |
168 |
Q |
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| T |
29473980 |
tttctcgatcaagtcgtgtattat |
29473957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 314
Target Start/End: Complemental strand, 29827462 - 29827387
Alignment:
| Q |
239 |
ccatgatgagcacaaagtatattttggacctctgtcaacccatatcctttgaagcaacaaacaatatcgagaaaaa |
314 |
Q |
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| T |
29827462 |
ccatgatgagcacaaagaatatctttgacctctcccaaatcataccctttgaagcaacaagcaatgtcgagaaaaa |
29827387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 144
Target Start/End: Complemental strand, 28141174 - 28141118
Alignment:
| Q |
88 |
tctactacatttcccaggctctgttggtgattcttgacaaacaagttctttagccat |
144 |
Q |
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| T |
28141174 |
tctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccat |
28141118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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