View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17518_low_19 (Length: 330)

Name: NF17518_low_19
Description: NF17518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17518_low_19
NF17518_low_19
[»] chr2 (1 HSPs)
chr2 (1-290)||(33185729-33186018)


Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 33186018 - 33185729
Alignment:
Q  1 ggaagctacttgataattgaagtgtgtgtgataattaaagaaatttgtgtggaatttaaactaaagtttttcgtgaaatgctccatgatcttaggggaag 100  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33186018 ggaagctacttgataattgaagtgtgtgtgacaattaacgaaatttgtgtggaatttaaactaaagtttttcgtgaaatgctccatgatcttaggggaag 33185919  T
Q  101 aaagcttgttgcttgcaattgcaaggttgaatgagagagtgcaattcaactaaattctcggtttgagcatagttgagtaatgtacaagcatataggcatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33185918 aaagcttgttgcttgcaattgcaaggttgaatgagagagtgcaattcaactaaattctcggtttgagcatagttgagtaatgtacaagcatataggcatg 33185819  T
Q  201 attatgtgctccaagttctctattatttattgcaataattaacaaaagttaacttgttttgaagatagtttaagaaagctttcaagttca 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33185818 attatgtgctccaagttctctattatttattgcaataattaacaaaagttaacttgttttgaagatagtttaagaaagctttcaagttca 33185729  T

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