View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17518_low_2 (Length: 983)

Name: NF17518_low_2
Description: NF17518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17518_low_2
NF17518_low_2
[»] chr4 (3 HSPs)
chr4 (218-687)||(30585566-30586035)
chr4 (729-969)||(30586772-30587012)
chr4 (1-108)||(30585357-30585464)
[»] chr1 (1 HSPs)
chr1 (312-355)||(2832080-2832123)
[»] scaffold0091 (1 HSPs)
scaffold0091 (305-350)||(6033-6078)
[»] chr8 (1 HSPs)
chr8 (305-350)||(5226616-5226661)
[»] chr5 (1 HSPs)
chr5 (311-352)||(6938655-6938696)
[»] chr3 (3 HSPs)
chr3 (317-355)||(53762313-53762351)
chr3 (316-357)||(20880588-20880629)
chr3 (312-349)||(27795938-27795975)
[»] chr7 (1 HSPs)
chr7 (313-342)||(753078-753107)
[»] chr2 (1 HSPs)
chr2 (714-767)||(21807035-21807088)


Alignment Details
Target: chr4 (Bit Score: 438; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 218 - 687
Target Start/End: Original strand, 30585566 - 30586035
Alignment:
Q  218 ttctgtattactattttgttaatcctttgctcaactatttatttatcttcataagttgtttccattagttcttgtatacagtctcattctcattagtgct 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  30585566 ttctgtattactattttgttaatcctttgctcaactatttatttatcttcataagttgtttccatgagttcttgtatacagtctcattctcattagtgct 30585665  T
Q  318 tatgcaagtagataagctcaaataaactaatccaagcatgacccttgcatttgatatttctcactaatttgtaaaggttggtaggattatgtttggcttt 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  30585666 tatgcaagtagataagctcaaataaactaatccaagcatgacccttgcatttgatatttctcgctaatttgtaaaggttggtaggattatgtttggcttt 30585765  T
Q  418 ttacactattagagaagaaatagaagacatgaggataaacgtttcttagtatctagaatgaaaggaatcagaggcaatgttgacttatatacaaatggaa 517  Q
    ||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30585766 ttacacttttagagaagaaatagaagacatgaggaaaaatgtttcttagtatctagaatgaaaggaatcagaggcaatgttgacttatatacaaatggaa 30585865  T
Q  518 ctaattcccttgttgagccatcactttagtctaactaactggcctagtcaacatgtaactgacttaacgacaaactaggcagaatccccaaagctaaagc 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||    
T  30585866 ctaattcccttgttgagccatcactttagtctaactaactggcctagtcaacatgtaactgccttaacgataaactaggcagactccccaaagctaaagc 30585965  T
Q  618 tgaaagatgtctgcagtttgatcgctgcttgacagaggtagctgtttcatcagccctcaaagaaattctc 687  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30585966 tgaaagatgtctgcagtttgatcgctgcttgacagaggtagctgtttcatcagccctcaaagaaattctc 30586035  T

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Target: chr4; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 729 - 969
Target Start/End: Original strand, 30586772 - 30587012
Alignment:
Q  729 atgaaatacatgatttgttgctatatgtaaagcactttggctgattggctgtcacagtacgatacaacaggcttggtgcaagctatctgtgaatcttatg 828  Q
    |||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30586772 atgaaatacatgatttgttgctatatgtaaacaactttggctcattggctgtcacagtacgatacaacaggcttggtgcaagctatctgtgaatcttatg 30586871  T
Q  829 agaagtaggtgagccactgcaatttgcaggtggcagatgctaacgctcggtatttccactttttgtaatcaagaataatagcatactgagaatttttctt 928  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30586872 agaagtaggtgagccactgcaatttgccggtggcagatgctaacactcggtatttccactttttgtaatcaagaataatagcatactgagaatttttctt 30586971  T
Q  929 ctgtaccataccgcttatcaagatttctcttctcatctgtg 969  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  30586972 ctgtaccataccgcttatcaagatttctcttctcatctgtg 30587012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 30585357 - 30585464
Alignment:
Q  1 ttaccacaagaattcagagacgcatttatggtaaagctactgatgttctcattcgtcctcttgatcaagacaaggctgttcaagctgctgctgatcttct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30585357 ttaccacaagaattcagagacgcatttatggtaaagctactgatgttctcattcgtcctcttgatcaagacaaggctgttcaagctgctgctgatcttct 30585456  T
Q  101 tggagaac 108  Q
    ||||||||    
T  30585457 tggagaac 30585464  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 312 - 355
Target Start/End: Original strand, 2832080 - 2832123
Alignment:
Q  312 agtgcttatgcaagtagataagctcaaataaactaatccaagca 355  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||    
T  2832080 agtgcttatgctagtagataagctcaaataagctaatccaagca 2832123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 305 - 350
Target Start/End: Original strand, 6033 - 6078
Alignment:
Q  305 tctcattagtgcttatgcaagtagataagctcaaataaactaatcc 350  Q
    |||||| |||||||||||||||||||||| |||||||||| |||||    
T  6033 tctcataagtgcttatgcaagtagataagatcaaataaacaaatcc 6078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 305 - 350
Target Start/End: Original strand, 5226616 - 5226661
Alignment:
Q  305 tctcattagtgcttatgcaagtagataagctcaaataaactaatcc 350  Q
    |||||| |||||||||||||||||||||| |||||||||| |||||    
T  5226616 tctcataagtgcttatgcaagtagataagatcaaataaacaaatcc 5226661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 311 - 352
Target Start/End: Complemental strand, 6938696 - 6938655
Alignment:
Q  311 tagtgcttatgcaagtagataagctcaaataaactaatccaa 352  Q
    |||||||||||| ||||||||||||||||||| |||||||||    
T  6938696 tagtgcttatgctagtagataagctcaaataacctaatccaa 6938655  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 317 - 355
Target Start/End: Complemental strand, 53762351 - 53762313
Alignment:
Q  317 ttatgcaagtagataagctcaaataaactaatccaagca 355  Q
    |||||| ||||||||||||||||||||| ||||||||||    
T  53762351 ttatgctagtagataagctcaaataaaccaatccaagca 53762313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 316 - 357
Target Start/End: Original strand, 20880588 - 20880629
Alignment:
Q  316 cttatgcaagtagataagctcaaataaactaatccaagcatg 357  Q
    ||||||||||||||||||||||||||| | ||||||| ||||    
T  20880588 cttatgcaagtagataagctcaaataagccaatccaaacatg 20880629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 312 - 349
Target Start/End: Complemental strand, 27795975 - 27795938
Alignment:
Q  312 agtgcttatgcaagtagataagctcaaataaactaatc 349  Q
    ||||||||||| ||||||||||||||||||| ||||||    
T  27795975 agtgcttatgccagtagataagctcaaataagctaatc 27795938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 313 - 342
Target Start/End: Original strand, 753078 - 753107
Alignment:
Q  313 gtgcttatgcaagtagataagctcaaataa 342  Q
    ||||||||||||||||||||||||||||||    
T  753078 gtgcttatgcaagtagataagctcaaataa 753107  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 714 - 767
Target Start/End: Original strand, 21807035 - 21807088
Alignment:
Q  714 gtgtttggttctctcatgaaatacatgatttgttgctatatgtaaagcactttg 767  Q
    |||||| ||||| |||||||| ||| |||||| ||||||||| |||||||||||    
T  21807035 gtgttttgttctttcatgaaacacaggatttgctgctatatgcaaagcactttg 21807088  T

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