View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17518_low_20 (Length: 324)
Name: NF17518_low_20
Description: NF17518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17518_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 34816549 - 34816242
Alignment:
| Q |
1 |
tgtactcccaccatttcccattttttccgcatcatacccttgaaccaatcctctcccccgacccccattacccacaccacacaagtccttccaccacaat |
100 |
Q |
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| T |
34816549 |
tgtactcccaccatttcccattttttccgcatcatacccttgaaccaatcctctcccccaacccccattacccacaccacacaagtccttccaccacaat |
34816450 |
T |
|
| Q |
101 |
gaagctagactcaatctgtcaaaattagataaatccgagttagccacaatactaactttgtacttggcatataaggcaccttttgcaatgagaatcaccc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
34816449 |
gaagctagactcaatctgtcaaaattagataaatccgagttagccacaataccaactttgtacttggc--atacggcaccttttgcaatgagaatcaccc |
34816352 |
T |
|
| Q |
201 |
ttgcagtagtactctcattaatgatattgggatagaacccaaaatagaattgatgtgaacgactctaccactgagactaacatatatatcctcaacgatc |
300 |
Q |
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|||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
34816351 |
ttgcagcagtactctcattaatgatgttgggatagaacccaaaatagaattgatgtgaacaactctaccactgagactaacatatgtatcctcaacgatc |
34816252 |
T |
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| Q |
301 |
gcaatttgat |
310 |
Q |
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|||||||||| |
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| T |
34816251 |
gcaatttgat |
34816242 |
T |
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