View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17518_low_22 (Length: 298)

Name: NF17518_low_22
Description: NF17518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17518_low_22
NF17518_low_22
[»] chr5 (2 HSPs)
chr5 (160-282)||(4679710-4679832)
chr5 (1-95)||(4679897-4679991)
[»] chr4 (2 HSPs)
chr4 (1-94)||(40768433-40768526)
chr4 (1-94)||(40775065-40775158)


Alignment Details
Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 160 - 282
Target Start/End: Complemental strand, 4679832 - 4679710
Alignment:
Q  160 cataatctagtaaatattgcaattaattaccatgcaggagctcnnnnnnnctccccttcttttggtatctcaccaacatatctatctgaattaatttcat 259  Q
    |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4679832 cataatctagtaaatattgcaattaattaccatgcaggagctctttttttctccccttcttttggtatctcaccaacatatctatctgaattaatttcat 4679733  T
Q  260 atttgtaagttggtgcaaagttt 282  Q
    |||||||||||||||||||||||    
T  4679732 atttgtaagttggtgcaaagttt 4679710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 4679991 - 4679897
Alignment:
Q  1 aactggtctatgatctgagagcttaatttctgcacgttcataatttagttgctttattccttttcctagccacaatattctatcacacctgcatg 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  4679991 aactggtctatgatctgagagcttaatttctgcacgttcataatttagttgctttattccttttcctagccacaatattcgatcacacctgcatg 4679897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 40768433 - 40768526
Alignment:
Q  1 aactggtctatgatctgagagcttaatttctgcacgttcataatttagttgctttattccttttcctagccacaatattctatcacacctgcat 94  Q
    |||||||| ||||||||| |||| | |||||||||  | ||| ||||||||||||||||||||||| ||||||||||| | |||||||||||||    
T  40768433 aactggtcgatgatctgaaagctgattttctgcactctgatactttagttgctttattccttttccaagccacaatatgcgatcacacctgcat 40768526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 40775065 - 40775158
Alignment:
Q  1 aactggtctatgatctgagagcttaatttctgcacgttcataatttagttgctttattccttttcctagccacaatattctatcacacctgcat 94  Q
    |||||||| ||||||||| |||| | ||||||||| || ||| || |||||||||||||||||||| ||||||||||| | |||||||||||||    
T  40775065 aactggtcgatgatctgaaagctgattttctgcactttgatacttaagttgctttattccttttccaagccacaatatgcgatcacacctgcat 40775158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University