View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17518_low_25 (Length: 277)
Name: NF17518_low_25
Description: NF17518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17518_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 22 - 266
Target Start/End: Original strand, 7224090 - 7224334
Alignment:
| Q |
22 |
ggggtatgttcatactgttgaaattcattctgctgctttatcaattcaacatcatcactaacactgnnnnnnngcttactataagaaatcttcctagacc |
121 |
Q |
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| T |
7224090 |
ggggtatgttcatactgttgaaattcattctgctgctttatcaattcagcatcatcactaacactgtttttttgcttactataagaaatcttcctagacc |
7224189 |
T |
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| Q |
122 |
tagaacgaaatatattgaatctctctatttctgcctaaaacgaagagatatctgactcaagctcccaatggcattcatcataaggaagctctctccactt |
221 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
7224190 |
tagaaccaaatatattgaatctctctatttctgcctaaaacgaagagatatctgactcaagctcccaatggcattcatcataaggaagctctttccactt |
7224289 |
T |
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| Q |
222 |
cacaagatattccttctcagaaccattgtccctgtatgaaacaaa |
266 |
Q |
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|||||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
7224290 |
cacaagatattccttctcagcaccattgtccctgtattaaacaaa |
7224334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 26 - 266
Target Start/End: Original strand, 2918578 - 2918818
Alignment:
| Q |
26 |
tatgttcatactgttgaaattcattctgctgctttatcaattcaacatcatcactaacactgnnnnnnngcttactataagaaatcttcctagacctaga |
125 |
Q |
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| T |
2918578 |
tatgttcatactgttgaaattctttctgctgctttatcaattcagcatcatcactaacactgcctttttgcttacaataagaaatcttcctagacctaga |
2918677 |
T |
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| Q |
126 |
acgaaatatattgaatctctctatttctgcctaaaacgaagagatatctgactcaagctcccaatggcattcatcataaggaagctctctccacttcaca |
225 |
Q |
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|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2918678 |
acgaaatatattgaatctctctatttctgcctgaaacaaagagatatctgactcaagctcccaatggcattcatcataaggaagctctttccacttcaca |
2918777 |
T |
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| Q |
226 |
agatattccttctcagaaccattgtccctgtatgaaacaaa |
266 |
Q |
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| T |
2918778 |
agatattccttctcagcaccatggtccctgtattaaacaaa |
2918818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 121 - 240
Target Start/End: Complemental strand, 49038038 - 49037919
Alignment:
| Q |
121 |
ctagaacgaaatatattgaatctctctatttctgcctaaaacgaagagatatctgactcaagctcccaatggcattcatcataaggaagctctctccact |
220 |
Q |
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|||||||||||| |||| ||||| |||||||| | || ||| | ||| ||||| |||||| ||||||| ||||||||||| ||||||||| |||||| |
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| T |
49038038 |
ctagaacgaaatctattaaatctttctatttccggctgaaatgcagaaatatcagactcagattcccaataacattcatcatatggaagctctttccact |
49037939 |
T |
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| Q |
221 |
tcacaagatattccttctca |
240 |
Q |
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|||| ||||||||| ||||| |
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| T |
49037938 |
tcaccagatattccctctca |
49037919 |
T |
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