View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17518_low_28 (Length: 252)
Name: NF17518_low_28
Description: NF17518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17518_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 95 - 236
Target Start/End: Original strand, 47918972 - 47919112
Alignment:
| Q |
95 |
tctggattttagtaaaagcatctggattcagtagcacactgcagtgctgcacattctagtatattaataa-------catgctgtgtgtctaatatcagc |
187 |
Q |
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| T |
47918972 |
tctggattttagtaaaagcatctggattcagtagcacactgca--------cattctagtatattaataagtaataacatgttgtgtgtctaatatcagc |
47919063 |
T |
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| Q |
188 |
atgttctagatgtgataatagttattattatgatattatcactacttga |
236 |
Q |
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| T |
47919064 |
atgttctatatgtgataatagttattattatgatattatcactacttga |
47919112 |
T |
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Target: chr4; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 47916393 - 47916480
Alignment:
| Q |
1 |
tattgtattttgttgtgcatttgaacactttgcaaaacaaaaaagaataatatgtagagaaaataacaatgacaaacgacagccaaac |
88 |
Q |
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| T |
47916393 |
tattgtattttgttgtgcatttgaacactttgcaaaacaaaaaagaataatatgtagagaaaataacaatgaaaaacgacagccaaac |
47916480 |
T |
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