View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17518_low_34 (Length: 218)

Name: NF17518_low_34
Description: NF17518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17518_low_34
NF17518_low_34
[»] chr1 (1 HSPs)
chr1 (23-201)||(9111645-9111843)
[»] chr6 (2 HSPs)
chr6 (27-106)||(4845943-4846023)
chr6 (146-188)||(4846055-4846097)
[»] chr8 (2 HSPs)
chr8 (29-86)||(41739972-41740029)
chr8 (157-198)||(41740144-41740185)
[»] scaffold0076 (2 HSPs)
scaffold0076 (44-97)||(6910-6964)
scaffold0076 (118-175)||(7006-7062)
[»] chr4 (2 HSPs)
chr4 (146-198)||(895315-895367)
chr4 (22-60)||(895382-895420)
[»] chr3 (2 HSPs)
chr3 (132-201)||(16366541-16366611)
chr3 (28-60)||(16366508-16366540)


Alignment Details
Target: chr1 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 23 - 201
Target Start/End: Original strand, 9111645 - 9111843
Alignment:
Q  23 gtaaccaggaagaaaaattgggaagaaagaaagagtttttgtgttggtggaaaagtggtattttctgatcaagaattgtttcccaaattctaaaa----- 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||         
T  9111645 gtaaccaggaagaaaaattgggaagaaagaaagagtttttgtgttggtggaaaagtggtattttctgatcaagaagtgtttcccaaattctaaaaagaaa 9111744  T
Q  118 ---------------atgcttctggtaaaaagcgtgcttcagctattgtccatcgtaaaaagcactatgttattatcatatatacttccaacatatttt 201  Q
                   ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  9111745 gtatatattttgggtatgcttctggtaaaaagcgtgcttcagctattgtccatcgtaaaaagcactgtgttattatcatatatacttccaacatatttt 9111843  T

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Target: chr6 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 27 - 106
Target Start/End: Original strand, 4845943 - 4846023
Alignment:
Q  27 ccaggaagaaaaattgggaagaaagaaagagtttttgtgttggtggaaaagtggta-ttttctgatcaagaattgtttccc 106  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||| ||||    
T  4845943 ccaggaagaaaaattgggaagaaagaaagagcttttgtgttggtggaaaagtggtatttttctgatcaagaagtgtctccc 4846023  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 188
Target Start/End: Original strand, 4846055 - 4846097
Alignment:
Q  146 tattgtccatcgtaaaaagcactatgttattatcatatatact 188  Q
    |||||||||| |||||||| ||||| |||||||||||||||||    
T  4846055 tattgtccattgtaaaaagtactatcttattatcatatatact 4846097  T

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Target: chr8 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 41739972 - 41740029
Alignment:
Q  29 aggaagaaaaattgggaagaaagaaagagtttttgtgttggtggaaaagtggtatttt 86  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  41739972 aggaagaaaaattgagaagaaagaaagagtttttgtgttggtggaaaagtggtatttt 41740029  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 157 - 198
Target Start/End: Original strand, 41740144 - 41740185
Alignment:
Q  157 gtaaaaagcactatgttattatcatatatacttccaacatat 198  Q
    |||||||||||| ||||||||||||||||| | |||||||||    
T  41740144 gtaaaaagcactttgttattatcatatatattcccaacatat 41740185  T

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Target: scaffold0076 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 44 - 97
Target Start/End: Original strand, 6910 - 6964
Alignment:
Q  44 gaagaaagaaagagtttttgtgttggtggaaaagtggta-ttttctgatcaagaa 97  Q
    ||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||    
T  6910 gaagaaaaaaagagtttttatgttggtggaaaagtggtatttttctgatcaagaa 6964  T

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Target: scaffold0076; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 175
Target Start/End: Original strand, 7006 - 7062
Alignment:
Q  118 atgcttctggtaaaaagcgtgcttcagctattgtccatcgtaaaaagcactatgttat 175  Q
    ||||||||||||||| ||||||||| | ||||||||||||||||||||||||| ||||    
T  7006 atgcttctggtaaaa-gcgtgcttctggtattgtccatcgtaaaaagcactatcttat 7062  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 146 - 198
Target Start/End: Complemental strand, 895367 - 895315
Alignment:
Q  146 tattgtccatcgtaaaaagcactatgttattatcatatatacttccaacatat 198  Q
    |||||||||| ||||||| |||||||||||||||||||||||| |||| ||||    
T  895367 tattgtccatagtaaaaaacactatgttattatcatatatactcccaagatat 895315  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 60
Target Start/End: Complemental strand, 895420 - 895382
Alignment:
Q  22 agtaaccaggaagaaaaattgggaagaaagaaagagttt 60  Q
    |||||| ||||||||||||||||||||||||||| ||||    
T  895420 agtaactaggaagaaaaattgggaagaaagaaagtgttt 895382  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 132 - 201
Target Start/End: Original strand, 16366541 - 16366611
Alignment:
Q  132 aagcgtgcttcagctattgtccatcgtaaaaag-cactatgttattatcatatatacttccaacatatttt 201  Q
    |||||||||| |  ||||||||||||||||||  ||||| |||||||||||||||||| |||| |||||||    
T  16366541 aagcgtgcttgatgtattgtccatcgtaaaaaaacactacgttattatcatatatactcccaagatatttt 16366611  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 60
Target Start/End: Original strand, 16366508 - 16366540
Alignment:
Q  28 caggaagaaaaattgggaagaaagaaagagttt 60  Q
    |||||||||||||||||||||||||||||||||    
T  16366508 caggaagaaaaattgggaagaaagaaagagttt 16366540  T

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