View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17518_low_36 (Length: 209)

Name: NF17518_low_36
Description: NF17518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17518_low_36
NF17518_low_36
[»] chr8 (3 HSPs)
chr8 (12-209)||(15348887-15349084)
chr8 (116-209)||(12195331-12195424)
chr8 (116-209)||(12439759-12439852)
[»] chr4 (12 HSPs)
chr4 (14-156)||(48898794-48898936)
chr4 (116-207)||(48891445-48891536)
chr4 (14-57)||(48705238-48705281)
chr4 (14-57)||(48903120-48903163)
chr4 (14-57)||(49044045-49044088)
chr4 (14-52)||(7773684-7773722)
chr4 (14-52)||(48852851-48852889)
chr4 (27-57)||(48870713-48870743)
chr4 (27-57)||(48886399-48886429)
chr4 (24-58)||(50250637-50250671)
chr4 (116-209)||(48852697-48852790)
chr4 (116-157)||(49048530-49048571)
[»] chr6 (1 HSPs)
chr6 (14-52)||(21015994-21016032)


Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 12 - 209
Target Start/End: Complemental strand, 15349084 - 15348887
Alignment:
Q  12 gaaaatcacgatgaaaagccaaccaatgaatagccccattatagagacaccctgctttgggcatctcatcaaaattactcctataagggcaataagggca 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15349084 gaaaatcacgatgaaaagccaaccaatgaatagccccattatagagacaccctgctttgggcatctcatcaaaattactcctataagggcaataagggca 15348985  T
Q  112 gtccatttccttccacacattatctctcaacgagaaaaactccaaacacgaataaatattatctaaggtgggatcataggacattaaaaccaccaagt 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  15348984 gtccatttccttccacacattatctctcaacgagaaaaactccaaacacgaataaatattatctaaggcgggatcataggacattaaaaccaccaagt 15348887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 116 - 209
Target Start/End: Complemental strand, 12195424 - 12195331
Alignment:
Q  116 atttccttccacacattatctctcaacgagaaaaactccaaacacgaataaatattatctaaggtgggatcataggacattaaaaccaccaagt 209  Q
    ||||| ||||||  |||||||||||| |||||||| || ||| ||||  || | ||  ||||||| ||||||||||||| |||||| |||||||    
T  12195424 atttcattccacttattatctctcaatgagaaaaattctaaatacgatgaagttttcactaaggttggatcataggacaataaaacgaccaagt 12195331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 116 - 209
Target Start/End: Complemental strand, 12439852 - 12439759
Alignment:
Q  116 atttccttccacacattatctctcaacgagaaaaactccaaacacgaataaatattatctaaggtgggatcataggacattaaaaccaccaagt 209  Q
    ||||| ||||||  |||||||||||| |||||||| || ||| ||||  || | ||  ||||||| ||||||||||||| |||||| |||||||    
T  12439852 atttcattccacttattatctctcaatgagaaaaattctaaatacgatgaagttttcactaaggttggatcataggacaataaaacgaccaagt 12439759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 2e-32; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 14 - 156
Target Start/End: Complemental strand, 48898936 - 48898794
Alignment:
Q  14 aaatcacgatgaaaagccaaccaatgaatagccccattatagagacaccctgctttgggcatctcatcaaaattactcctataagggcaataagggcagt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||| | |||  | |||| |||  ||||  |||||||||| | || ||| |    
T  48898936 aaatcacgatgaaaagccaaccaatgaatagccccattatagagtgaccctgcatggggattatcattaaaggtacttgtataagggcattgagtgcact 48898837  T
Q  114 ccatttccttccacacattatctctcaacgagaaaaactccaa 156  Q
    | |||||||||||||||||||||||||| ||||||||||||||    
T  48898836 caatttccttccacacattatctctcaatgagaaaaactccaa 48898794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 116 - 207
Target Start/End: Complemental strand, 48891536 - 48891445
Alignment:
Q  116 atttccttccacacattatctctcaacgagaaaaactccaaacacgaataaatattatctaaggtgggatcataggacattaaaaccaccaa 207  Q
    ||||| ||||||| |||||||||||| |||||||||||||||| || || | ||  ||||||||| | ||||||||||| | ||||||||||    
T  48891536 atttctttccacatattatctctcaatgagaaaaactccaaacgcggatgattaccatctaaggttgtatcataggacactgaaaccaccaa 48891445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 48705238 - 48705281
Alignment:
Q  14 aaatcacgatgaaaagccaaccaatgaatagccccattatagag 57  Q
    |||||| || || |||||||||||||||||||||||||||||||    
T  48705238 aaatcatgacgataagccaaccaatgaatagccccattatagag 48705281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 57
Target Start/End: Complemental strand, 48903163 - 48903120
Alignment:
Q  14 aaatcacgatgaaaagccaaccaatgaatagccccattatagag 57  Q
    |||||| |||||||||||||| ||||||||||||||||| ||||    
T  48903163 aaatcatgatgaaaagccaactaatgaatagccccattaaagag 48903120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 49044045 - 49044088
Alignment:
Q  14 aaatcacgatgaaaagccaaccaatgaatagccccattatagag 57  Q
    |||||| |||||||||||||||| ||||||||||||||| ||||    
T  49044045 aaatcaagatgaaaagccaaccagtgaatagccccattaaagag 49044088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 7773684 - 7773722
Alignment:
Q  14 aaatcacgatgaaaagccaaccaatgaatagccccatta 52  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  7773684 aaatcacgacgcaaagccaaccaatgaatagccccatta 7773722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 48852889 - 48852851
Alignment:
Q  14 aaatcacgatgaaaagccaaccaatgaatagccccatta 52  Q
    |||||| || |||||||||||||||||||||||||||||    
T  48852889 aaatcatgacgaaaagccaaccaatgaatagccccatta 48852851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 57
Target Start/End: Complemental strand, 48870743 - 48870713
Alignment:
Q  27 aagccaaccaatgaatagccccattatagag 57  Q
    |||||||||||||||||||||||||||||||    
T  48870743 aagccaaccaatgaatagccccattatagag 48870713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 57
Target Start/End: Complemental strand, 48886429 - 48886399
Alignment:
Q  27 aagccaaccaatgaatagccccattatagag 57  Q
    |||||||||||||||||||||||||||||||    
T  48886429 aagccaaccaatgaatagccccattatagag 48886399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 58
Target Start/End: Original strand, 50250637 - 50250671
Alignment:
Q  24 gaaaagccaaccaatgaatagccccattatagaga 58  Q
    ||||||||||||||||||||||||||||| |||||    
T  50250637 gaaaagccaaccaatgaatagccccattaaagaga 50250671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 116 - 209
Target Start/End: Complemental strand, 48852790 - 48852697
Alignment:
Q  116 atttccttccacacattatctctcaacgagaaaaactccaaacacgaataaatattatctaaggtgggatcataggacattaaaaccaccaagt 209  Q
    ||||| |||||  ||||| ||||||| ||||||||||| |||   ||  ||| |||| ||||||| | |||||||||||||||||| |||||||    
T  48852790 atttctttccatgcattagctctcaatgagaaaaactctaaatgtgatgaaacattagctaaggttgtatcataggacattaaaactaccaagt 48852697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 116 - 157
Target Start/End: Original strand, 49048530 - 49048571
Alignment:
Q  116 atttccttccacacattatctctcaacgagaaaaactccaaa 157  Q
    ||||| ||||| | ||||||||||||||||||||||||||||    
T  49048530 atttctttccatatattatctctcaacgagaaaaactccaaa 49048571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 21016032 - 21015994
Alignment:
Q  14 aaatcacgatgaaaagccaaccaatgaatagccccatta 52  Q
    |||||| || |||||||||||||||||||||||||||||    
T  21016032 aaatcatgacgaaaagccaaccaatgaatagccccatta 21015994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University