View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17518_low_8 (Length: 515)
Name: NF17518_low_8
Description: NF17518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17518_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 50603623 - 50603415
Alignment:
| Q |
18 |
catttaaccttgatgtgattttgttgtatacatattctttatggcttttaccatcacaaaagtatgtaaaatatgcagaacaatcccaggttgggaaagg |
117 |
Q |
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| T |
50603623 |
catttaaccttgatgtgattttgttgtatacatattctttatggcttttaccatcacaaaagtatgtaaaatatgcagaacaatcccaggttgggaaagg |
50603524 |
T |
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| Q |
118 |
tcacacaagccattctttaggctcccaaatcccaattccatcccatattcagattcatttatctacataaactcattaattttatgacccgctttcattt |
217 |
Q |
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| T |
50603523 |
ttacacaagccattctttaggctcccaaatcccaattccatcccatattcagattcatttatctacataaactcattaattttatgacccgctttcattt |
50603424 |
T |
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| Q |
218 |
taattttaa |
226 |
Q |
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||||||||| |
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| T |
50603423 |
taattttaa |
50603415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 324 - 451
Target Start/End: Complemental strand, 50602841 - 50602714
Alignment:
| Q |
324 |
taatatcaattatctcgcatttaagttaatgttcaacgcatcattaataagattatctataacaaagagaacctataagaaaccaacaaaatttgcacac |
423 |
Q |
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| T |
50602841 |
taatatcaattatctcgcatttaagttaatgttcaacacatcattaataagattatctataacaaagagaacctataagaaaccaacaaaatttgcacac |
50602742 |
T |
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| Q |
424 |
acacatgatatttatttcaattttcata |
451 |
Q |
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| T |
50602741 |
acacatgatatttatttcaattttcata |
50602714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 218 - 320
Target Start/End: Complemental strand, 50603235 - 50603133
Alignment:
| Q |
218 |
taattttaatacttaataaaatttaaagaagttaactaacgtatagattgaacctaacggaagtaattaaactctcataacatagcaaattaatgtttat |
317 |
Q |
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| T |
50603235 |
taattttaatacttaataaaatttaaagaagttaactaacgtatagattgaacctaacggaagtaattaaactctcataacatagcaaattaatgtttat |
50603136 |
T |
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| Q |
318 |
ata |
320 |
Q |
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||| |
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| T |
50603135 |
ata |
50603133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 504
Target Start/End: Complemental strand, 50602688 - 50602659
Alignment:
| Q |
475 |
tcacgtaactttagctcggtcttacctatg |
504 |
Q |
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| T |
50602688 |
tcacgtaactttagctcggtcttacctatg |
50602659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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