View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17519_high_4 (Length: 248)
Name: NF17519_high_4
Description: NF17519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17519_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 60 - 230
Target Start/End: Complemental strand, 40289420 - 40289250
Alignment:
| Q |
60 |
taggattgttccagccatggttcaaattcaagtacagtcgatcaattcgaccttaactggagttcattaaatagccacttgtgtccaaccacttagttaa |
159 |
Q |
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| T |
40289420 |
taggattgttccagccatggttcaaattcaagtacagtcgatcaattcgaccttaactggagttcattaaatagccacttgtgtccaaccacttagttaa |
40289321 |
T |
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| Q |
160 |
cttataatcagtttgttacatccaaatataaaactgtggacatgacttaagagacttacatggtatctgac |
230 |
Q |
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| T |
40289320 |
cttataatcagtttgttacatccaaatataaaactgtggacatgacttaagagacttacatggtatctgac |
40289250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 40289641 - 40289580
Alignment:
| Q |
1 |
ttcaagaaagcggaccttagtaatatggagtttggccgagaggtaagttaaccataacctag |
62 |
Q |
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| T |
40289641 |
ttcaagaaagcggaccttagtaatatggagtttggccgagaggtaagttaaccataacctag |
40289580 |
T |
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