View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17519_low_2 (Length: 454)
Name: NF17519_low_2
Description: NF17519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17519_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 184 - 432
Target Start/End: Complemental strand, 45293881 - 45293633
Alignment:
| Q |
184 |
gccggtgtgatcgaagttactaattaattgatcatccatgcatgcagccaacaccgcaatggggttcattggaaaggcaatgacatttgagaacacagcc |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
45293881 |
gccggtgtgatcgaagttactaattaattgatcatccatgcatgcagccaacaccgcattggggttcattggaaaggcaatgacatttgagaacacagcc |
45293782 |
T |
|
| Q |
284 |
ggtcctgctggtcaccaagctgtggcatttagaaaccaaggagatatgtctgctttggtgggttgccatatcgtaggttaccaagacactttgtacgttc |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
45293781 |
ggtcctgctggtcaccaagctgtggcatttagaaaccaaggagatatgtctgctttggtgggttgccatatcctgggttaccaagacactttgtacgttc |
45293682 |
T |
|
| Q |
384 |
aaaccaacaggcaattctaccgcaactgtgttatctccggtaccattga |
432 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||| |||||| |||| |
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| T |
45293681 |
aaaccaacaggcaattctaccgcaattgtgttatctctggtaccgttga |
45293633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 184 - 432
Target Start/End: Complemental strand, 45302841 - 45302593
Alignment:
| Q |
184 |
gccggtgtgatcgaagttactaattaattgatcatccatgcatgcagccaacaccgcaatggggttcattggaaaggcaatgacatttgagaacacagcc |
283 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
45302841 |
gccggtgtgatcgaagttactaattaattgatcatccatgcatgcagccaacaccgcattggggttcattggaaaggcaatgacatttgagaacacagcc |
45302742 |
T |
|
| Q |
284 |
ggtcctgctggtcaccaagctgtggcatttagaaaccaaggagatatgtctgctttggtgggttgccatatcgtaggttaccaagacactttgtacgttc |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
45302741 |
ggtcctgctggtcaccaagctgtggcatttagaaaccaaggagatatgtctgctttggtgggttgccatatcctgggttaccaagacactttgtacgttc |
45302642 |
T |
|
| Q |
384 |
aaaccaacaggcaattctaccgcaactgtgttatctccggtaccattga |
432 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||| |||||| |||| |
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| T |
45302641 |
aaaccaacaggcaattctaccgcaattgtgttatctctggtaccgttga |
45302593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 184 - 436
Target Start/End: Complemental strand, 45270771 - 45270519
Alignment:
| Q |
184 |
gccggtgtgatcgaagttactaattaattgatcatccatgcatgcagccaacaccgcaatggggttcattggaaaggcaatgacatttgagaacacagcc |
283 |
Q |
| |
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|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45270771 |
gccggtgttatagaagttactaattaattgatcatccatgcatgcagccaacaccgcaatggggttcattggaaaggcaatgacatttgagaacacagcc |
45270672 |
T |
|
| Q |
284 |
ggtcctgctggtcaccaagctgtggcatttagaaaccaaggagatatgtctgctttggtgggttgccatatcgtaggttaccaagacactttgtacgttc |
383 |
Q |
| |
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|||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45270671 |
ggtcctgccggtatgcaagctgtggcatttagaaacataggagatatgtctgctttggtgggttgccatatcgtaggttaccaagacactttgtacgttc |
45270572 |
T |
|
| Q |
384 |
aaaccaacaggcaattctaccgcaactgtgttatctccggtaccattgacttc |
436 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45270571 |
aaaccaacaggcaattctaccgcaactgtgttatctccggtaccattgacttc |
45270519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 189 - 436
Target Start/End: Complemental strand, 45282536 - 45282289
Alignment:
| Q |
189 |
tgtgatcgaagttactaattaattgatcatccatgcatgcagccaacaccgcaatggggttcattggaaaggcaatgacatttgagaacacagccggtcc |
288 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45282536 |
tgtgatcgaaattactaattaattgattatccatgaatgcagccaacaccgcaatggggttcattggaaaggcaatgacatttgagaacacagccggtcc |
45282437 |
T |
|
| Q |
289 |
tgctggtcaccaagctgtggcatttagaaaccaaggagatatgtctgctttggtgggttgccatatcgtaggttaccaagacactttgtacgttcaaacc |
388 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||| | |
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| T |
45282436 |
tgatggtcaccaagctgtggcatttagaaaccaaggagatatgtctgctttggtgggttgccatatcgtgggttaccaagacagcttgtatgttcaaagc |
45282337 |
T |
|
| Q |
389 |
aacaggcaattctaccgcaactgtgttatctccggtaccattgacttc |
436 |
Q |
| |
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||||| || | ||||||||| ||| || |||| |||||| |||||||| |
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| T |
45282336 |
aacagacagtactaccgcaattgtcttgtctcgggtaccgttgacttc |
45282289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 188 - 425
Target Start/End: Complemental strand, 45274294 - 45274057
Alignment:
| Q |
188 |
gtgtgatcgaagttactaattaattgatcatccatgcatgcagccaacaccgcaatggggttcattggaaaggcaatgacatttgagaacacagccggtc |
287 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45274294 |
gtgtgatcgaaattactaattaattgattatccatgcgtgcagccaacaccgcaatagggttcattggaaaggcaatgacatttgagaacacagccggtc |
45274195 |
T |
|
| Q |
288 |
ctgctggtcaccaagctgtggcatttagaaaccaaggagatatgtctgctttggtgggttgccatatcgtaggttaccaagacactttgtacgttcaaac |
387 |
Q |
| |
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||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||| |
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| T |
45274194 |
ctgatggtcaccaagctgtggcatttagaaacgtaggagatatgtctgctttggtgggttgccatatcgtgggttaccaagacagcttgtatgttcaaag |
45274095 |
T |
|
| Q |
388 |
caacaggcaattctaccgcaactgtgttatctccggta |
425 |
Q |
| |
|
||||||||| | ||||||||| ||| || |||| |||| |
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|
| T |
45274094 |
caacaggcagtactaccgcaattgtcttgtctctggta |
45274057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 5 - 170
Target Start/End: Complemental strand, 45270963 - 45270801
Alignment:
| Q |
5 |
acagaacagtgccccctttggtacgtaattcagttattatcgatcaaagcttttttattttatttaattaattgtgtaccttatgaatgaagagagagta |
104 |
Q |
| |
|
|||||||| |||| ||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45270963 |
acagaacactgccaccttttgtacgtaattcagttat-atcgatcaaagctttt--attttatttaattaattgtgtaccttatgaatgaagagagagta |
45270867 |
T |
|
| Q |
105 |
gatgtgaaatagtagcatcactctcaaaattcatttatgaagaaaacattaactcacattgaaaag |
170 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
45270866 |
gatgtgaaatagtagcatcactctcaaaattcatttttgaaaaaaacattaactcacattgaaaag |
45270801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 45294111 - 45293959
Alignment:
| Q |
19 |
cctttggtacgtaattcagttattatcgatcaaagcttttttattttatttaattaattgtgtaccttatgaatgaagagagagta--gatgtgaaatag |
116 |
Q |
| |
|
|||| |||| |||||||| |||| |||||||| | ||||||||||||||||||| |||||||||||||||||||||||| || ||| |||| ||||||| |
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|
| T |
45294111 |
ccttcggtaagtaattcaattatcatcgatcacaacttttttattttatttaataaattgtgtaccttatgaatgaagaaagggtaatgatgagaaatag |
45294012 |
T |
|
| Q |
117 |
tagcatcactctcaaaattcatttatgaagaaaacattaactcacattgaaaag |
170 |
Q |
| |
|
|| ||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
45294011 |
taacatcactctcaaaattcatttttgaagaaaaca-taactcacattgaaaag |
45293959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 45303071 - 45302919
Alignment:
| Q |
19 |
cctttggtacgtaattcagttattatcgatcaaagcttttttattttatttaattaattgtgtaccttatgaatgaagagagagta--gatgtgaaatag |
116 |
Q |
| |
|
|||| |||| |||||||| |||| |||||||| | ||||||||||||||||||| |||||||||||||||||||||||| || ||| |||| ||||||| |
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|
| T |
45303071 |
ccttcggtaagtaattcaattatcatcgatcacaacttttttattttatttaataaattgtgtaccttatgaatgaagaaagggtaatgatgagaaatag |
45302972 |
T |
|
| Q |
117 |
tagcatcactctcaaaattcatttatgaagaaaacattaactcacattgaaaag |
170 |
Q |
| |
|
|| ||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
45302971 |
taacatcactctcaaaattcatttttgaagaaaaca-taactcacattgaaaag |
45302919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 45274482 - 45274331
Alignment:
| Q |
19 |
cctttggtacgtaattcagttattatcgatcaaagctttttt-attttatttaattaattgtgtaccttatgaatgaagagagagtagatgtgaaatagt |
117 |
Q |
| |
|
|||| ||||||||||||| |||||||| |||||||||||||| ||||||||| ||||||||| |||||||||| |||||| |||||| || |||| ||| |
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|
| T |
45274482 |
ccttcggtacgtaattcaattattatctatcaaagctttttttattttatttgattaattgtataccttatgattgaagaaagagtatataagaaaaagt |
45274383 |
T |
|
| Q |
118 |
agcatcactctcaaaattcatttatgaagaaaacattaactcacattgaaaag |
170 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||| |||||| |||||||||| |
|
|
| T |
45274382 |
agcatcactctcaaaatttatttttgaagaaaaca-taactcgcattgaaaag |
45274331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 45282723 - 45282574
Alignment:
| Q |
19 |
cctttggtacgtaattcagttattatcgatcaaagcttttttattttatttaattaattgtgtaccttatgaatgaagagagagtagatgtgaaatagta |
118 |
Q |
| |
|
|||| ||||| ||||||| |||| |||||||||| |||||||||||||||||||||||| | ||| ||||||||||||| |||||| ||| |||| ||| |
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|
| T |
45282723 |
ccttcggtacttaattcaattatcatcgatcaaaacttttttattttatttaattaattatttac-ttatgaatgaagaaagagtatatgagaaaaagtg |
45282625 |
T |
|
| Q |
119 |
gcatcactctcaaaattcatttatgaagaaaacattaactcacattgaaaag |
170 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||| ||||||||||| |
|
|
| T |
45282624 |
gcatcactctcaaaattcatttttgaagaaaaca-taactaacattgaaaag |
45282574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 296 - 339
Target Start/End: Complemental strand, 38587643 - 38587600
Alignment:
| Q |
296 |
caccaagctgtggcatttagaaaccaaggagatatgtctgcttt |
339 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
38587643 |
caccaagcagtggcatttagaaaccaaggagacatgtctgcttt |
38587600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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