View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17519_low_6 (Length: 238)
Name: NF17519_low_6
Description: NF17519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17519_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 14 - 221
Target Start/End: Complemental strand, 26180980 - 26180784
Alignment:
| Q |
14 |
agagcttatacggatccagtagtctacacggaaagcttgatatcaccttgttcgttggccatagtgaatcaatgatggtatatttgttgaaaatgaatag |
113 |
Q |
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| T |
26180980 |
agagcttatacggatccagtagtctacatggaaagcttgatatcaccttgttcgttggccatagtgaat-----------tatttgttgaaaatgaatag |
26180892 |
T |
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| Q |
114 |
ttgacagtgcatctcttatgcttaaataaacacatacattgcttgtattttgatgttaaaataacagctcatatttataggtgtccttgtcaattgaagt |
213 |
Q |
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| T |
26180891 |
ttgacagtgcatctcttatgcttaaataaacacatacattgcttgtattttgatgttaaaataacagctcatatttataggcgtccttgtcaattgaagt |
26180792 |
T |
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Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 139 - 220
Target Start/End: Complemental strand, 1189976 - 1189893
Alignment:
| Q |
139 |
ataaacacatacattgcttgtattttgatgttaaaataac--agctcatatttataggtgtccttgtcaattgaagtttcaagt |
220 |
Q |
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| T |
1189976 |
ataaacacatacattgcatgtattttgatgttaaaataacatacctcatatttataggggtcctggtcaattgaagtttcaagt |
1189893 |
T |
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